R: Naive Bayes Transmission Analysis

# Naive Bayes Transmission Analysis

## Documentation for package ‘nbTransmission’ version 1.1.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

clusterInfectors | Clusters the infectors based on their transmission probabilities
estimateR | Estimates the effective reproductive number
estimateRi | Estimates individual-level reproductive numbers
estimateRt | Estimates time-level reproductive numbers
estimateRtAvg | Estimates the average effective reproductive number
estimateSI | Estimates the generation/serial interval distribution
indData | Individual-level simulated outbreak dataset
indToPair | Transforms a dataset of individuals to a dataset of pairs
nbHeatmap | Plots a heatmap of the relative transmission probabilities
nbNetwork | Plots a network of the relative transmission probabilities
nbProbabilities | Estimates relative transmission probabilities
nbResults | Dataset with results of 'nbProbabilities'
pairData | Pair-level simulated outbreak dataset
performNB | Performs naive bayes classification
performPEM | Executes the PEM algorthim to estimate the generation/serial interval distribution
plotRt | Creates a plot of the effective reproductive number