R: Likelihood Based Optimal Partitioning and Indicator Species Analysis

# Likelihood Based Optimal Partitioning and Indicator Species Analysis

## Documentation for package ‘opticut’ version 0.1-3

- DESCRIPTION file.

## Help Pages

opticut-package | Likelihood Based Optimal Partitioning and Indicator Species Analysis
allComb | Finding All Possible Binary Partitions
as.data.frame.multicut | Multi-level Response Model
as.data.frame.opticut | Optimal Binary Response Model
as.data.frame.summary.multicut | Multi-level Response Model
as.data.frame.summary.opticut | Optimal Binary Response Model
as.data.frame.summary.uncertainty | Quantifying Uncertainty for Fitted Objects
as.data.frame.uncertainty | Quantifying Uncertainty for Fitted Objects
bestmodel | Best model, Partition, and MLE
bestmodel.multicut | Multi-level Response Model
bestmodel.opticut | Optimal Binary Response Model
bestmodel.optilevels | Optimal Number of Factor Levels
bestpart | Best model, Partition, and MLE
bestpart.multicut | Multi-level Response Model
bestpart.opticut | Optimal Binary Response Model
bestpart.uncertainty | Quantifying Uncertainty for Fitted Objects
bestpart.uncertainty1 | Quantifying Uncertainty for Fitted Objects
beta2i | Scaling for the Indicator Potential
birdrec | Bird Species Detections
bsmooth | Quantifying Uncertainty for Fitted Objects
bsmooth.uncertainty | Quantifying Uncertainty for Fitted Objects
bsmooth.uncertainty1 | Quantifying Uncertainty for Fitted Objects
checkComb | Finding All Possible Binary Partitions
check_strata | Quantifying Uncertainty for Fitted Objects
col2gray | Color Palettes for the opticut Package
dolina | Land Snail Data Set
fitted.multicut | Multi-level Response Model
fitted.opticut | Optimal Binary Response Model
fix_levels | Optimal Binary Response Model
getMLE | Best model, Partition, and MLE
getMLE.multicut | Multi-level Response Model
getMLE.opticut | Optimal Binary Response Model
iquantile | Lorenz Curve Based Thresholds and Partitions
iquantile.lorenz | Lorenz Curve Based Thresholds and Partitions
kComb | Finding All Possible Binary Partitions
lcplot | Multi-level Response Model
lcplot.multicut1 | Multi-level Response Model
lorenz | Lorenz Curve Based Thresholds and Partitions
multicut | Multi-level Response Model
multicut.default | Multi-level Response Model
multicut.formula | Multi-level Response Model
multicut1 | Multi-level Response Model
occolors | Color Palettes for the opticut Package
oComb | Ranking Based Binary Partitions
ocoptions | Options for the opticut Package
opticut | Optimal Binary Response Model
opticut.default | Optimal Binary Response Model
opticut.formula | Optimal Binary Response Model
opticut1 | Optimal Binary Response Model
optilevels | Optimal Number of Factor Levels
plot.lorenz | Lorenz Curve Based Thresholds and Partitions
plot.multicut | Multi-level Response Model
plot.multicut1 | Multi-level Response Model
plot.opticut | Optimal Binary Response Model
predict.multicut | Multi-level Response Model
predict.opticut | Optimal Binary Response Model
print.multicut | Multi-level Response Model
print.multicut1 | Multi-level Response Model
print.opticut | Optimal Binary Response Model
print.opticut1 | Optimal Binary Response Model
print.summary.lorenz | Lorenz Curve Based Thresholds and Partitions
print.summary.multicut | Multi-level Response Model
print.summary.opticut | Optimal Binary Response Model
print.summary.uncertainty | Quantifying Uncertainty for Fitted Objects
print.uncertainty | Quantifying Uncertainty for Fitted Objects
print.uncertainty1 | Quantifying Uncertainty for Fitted Objects
quantile.lorenz | Lorenz Curve Based Thresholds and Partitions
rankComb | Ranking Based Binary Partitions
strata | Optimal Binary Response Model
strata.multicut | Multi-level Response Model
strata.opticut | Optimal Binary Response Model
strata.uncertainty | Quantifying Uncertainty for Fitted Objects
subset.multicut | Multi-level Response Model
subset.opticut | Optimal Binary Response Model
subset.uncertainty | Quantifying Uncertainty for Fitted Objects
summary.lorenz | Lorenz Curve Based Thresholds and Partitions
summary.multicut | Multi-level Response Model
summary.opticut | Optimal Binary Response Model
summary.uncertainty | Quantifying Uncertainty for Fitted Objects
uncertainty | Quantifying Uncertainty for Fitted Objects
uncertainty.multicut | Quantifying Uncertainty for Fitted Objects
uncertainty.opticut | Quantifying Uncertainty for Fitted Objects
warblers | Warblers Data Set
wplot | Optimal Binary Response Model
wplot.opticut | Optimal Binary Response Model
wplot.opticut1 | Optimal Binary Response Model