MVP                     MVP, Memory-efficient, Visualization-enhanced,
                        Parallel-accelerated
MVP.BRENT.Vg.Ve         MVP.BRENT.Vg.Ve variance component estimation
                        using the BRENT method
MVP.Data                MVP.Data: To prepare data for MVP package
                        Author: Xiaolei Liu, Lilin Yin and Haohao Zhang
                        Build date: Aug 30, 2016 Last update: Sep 12,
                        2018
MVP.Data.Bfile2MVP      MVP.Data.Bfile2MVP: To transform plink binary
                        data to MVP package Author: Haohao Zhang Build
                        date: Sep 12, 2018
MVP.Data.Hapmap2MVP     MVP.Data.Hapmap2MVP: To transform Hapmap data
                        to MVP package Author: Haohao Zhang Build date:
                        Sep 12, 2018
MVP.Data.Kin            Kinship
MVP.Data.MVP2Bfile      MVP.Data.MVP2Bfile: To transform MVP data to
                        binary format Author: Haohao Zhang Build date:
                        Sep 12, 2018
MVP.Data.Map            MVP.Data.Map: To check map file Author: Haohao
                        Zhang Build date: Sep 12, 2018
MVP.Data.Numeric2MVP    MVP.Data.Numeric2MVP: To transform Numeric data
                        to MVP package Author: Haohao Zhang Build date:
                        Sep 12, 2018
MVP.Data.PC             Principal component analysis
MVP.Data.Pheno          MVP.Data.Pheno: To clean up phenotype file
                        Author: Haohao Zhang Build date: Sep 12, 2018
MVP.Data.VCF2MVP        MVP.Data.VCF2MVP: To transform vcf data to MVP
                        package Author: Haohao Zhang Build date: Sep
                        12, 2018
MVP.Data.impute         MVP.Data.impute: To impute the missing genotype
                        Author: Haohao Zhang Build date: Sep 12, 2018
MVP.EMMA.Vg.Ve          Estimate variance components using EMMA
MVP.FaSTLMM.LL          Evaluation of the maximum likelihood using
                        FaST-LMM method
MVP.FarmCPU             Perform GWAS using FarmCPU method
MVP.GLM                 To perform GWAS with GLM and MLM model and get
                        the P value of SNPs
MVP.HE.Vg.Ve            To estimate variance component using HE
                        regression
MVP.Hist                Phenotype distribution histogram
MVP.K.VanRaden          Calculate Kinship matrix by VanRaden method
MVP.MLM                 To perform GWAS with GLM and MLM model and get
                        the P value of SNPs
MVP.PCA                 Principal Component Analysis
MVP.PCAplot             PCA Plot
MVP.Report              MVP.Report
MVP.Report.Density      SNP Density
MVP.Report.QQplot       QQ Plot
MVP.Version             Print MVP Banner
MVP.calk                Calculate Kinship matrix by Blocking strategy
pig60K                  Genotyped by pig 60k chip
