secsse-package	secsse-package
cla_id_paramPos	cla_id_paramPos
cla_secsse_loglik	cla_secsse_loglik
cla_secsse_ml	cla_secsse_ml
cla_secsse_ml_func_def_pars	cla_secsse_ml_func_def_pars
create_default_lambda_transition_matrix	create_default_lambda_transition_matrix
create_default_shift_matrix	create_default_shift_matrix
create_lambda_list	create_lambda_list
create_mu_vector	create_mu_vector
create_q_matrix	create_q_matrix
default_params_doc	default_params_doc
event_times	event_times
example_phy_GeoSSE	example_phy_GeoSSE
expand_q_matrix	expand_q_matrix
extract_par_vals	extract_par_vals
fill_in	fill_in
id_paramPos	id_paramPos
phylo_vignette	phylo_vignette
plot_state_exact	plot_state_exact
prepare_full_lambdas	prepare_full_lambdas
q_doubletrans	q_doubletrans
secsse	secsse-package
secsse_loglik	secsse_loglik
secsse_loglik_eval	secsse_loglik_eval
secsse_ml	secsse_ml
secsse_ml_func_def_pars	secsse_ml_func_def_pars
secsse_sim	secsse_sim
sortingtraits	sortingtraits
traits	traits
