bam2DNAStringSet	bam2DNAStringSet
bam2DNAStringSet2	bam2DNAStringSet2
bs_aln	bs_aln
bs_consensus	consensus
bs_filter	bs_filter
bs_hamming	bs_hamming
bs_rename	bs_rename
clw_read	msa-read
consensus	consensus
download_genbank	download_genbank
fas2phy	fas2phy
fa_combine	fa_combine
fa_filter	fa_filter
fa_read	msa-read
fa_rename	fa_rename
fa_to_interleaved	fa_conversion
fa_to_sequential	fa_conversion
fa_write	fa_write
gb_read	gb_read
get_id	get_id
mega_read	msa-read
phy2fas	phy2fas
phy_read	phy_read
phy_write	phy_write
renameTXT	renameTXT
replaceInside	replaceInside
seqlen	seqlen
sth_read	msa-read
