R: Diagnostics for Pharmacometric Models

# Diagnostics for Pharmacometric Models

## Documentation for package ‘xpose’ version 0.4.18

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

absval_res_vs_idv | Residuals plotted against the independent variable
absval_res_vs_pred | Residuals plotted against population predictions
amt_vs_idv | Compartment kinetics
cov_distrib | Distribution plots of ETA and parameters
cov_qq | QQ plots of ETA and residuals
data_opt | Create options for data import
distinct.xpose_data | Subset datasets in an xpdb
distrib_plot | Distribution plots of ETA and parameters
dv_preds_vs_idv | Observations and model predictions plotted against the independent variable
dv_vs_idv | Observations and model predictions plotted against the independent variable
dv_vs_ipred | Observations plotted against model predictions
dv_vs_pred | Observations plotted against model predictions
eta_distrib | Distribution plots of ETA and parameters
eta_qq | QQ plots of ETA and residuals
filter.xpose_data | Subset datasets in an xpdb
get_code | Access model code
get_data | Access model output table data
get_file | Access model output file data
get_prm | Access model parameters
get_special | Access special model data
get_summary | Access model summary data
gg_themes | An additional set of themes for ggplot2
grd_vs_iteration | Parameter value or gradient vs. iterations
group_by.xpose_data | Group/ungroup and summarize variables in an xpdb
ind_plots | Observations, individual predictions and population predictions plotted against the independent variable for every individual
ipred_vs_idv | Observations and model predictions plotted against the independent variable
irep | Add simulation counter
list_data | List available datasets
list_files | List available datasets
list_nm_tables | List NONMEM output tables
list_special | List available datasets
list_vars | List available variables
list_xpdb | List available datasets
manual_nm_import | Manually define nonmem tables to be imported
minimization_plots | Parameter value or gradient vs. iterations
modify_xpdb | Add, remove or rename variables in an xpdb
mutate.xpose_data | Add, remove or rename variables in an xpdb
pred_vs_idv | Observations and model predictions plotted against the independent variable
print.xpose_data | Print an xpose_data object
print.xpose_plot | Draw an xpose_plot object
prm_distrib | Distribution plots of ETA and parameters
prm_qq | QQ plots of ETA and residuals
prm_table | Display a parameter estimates to the console
prm_vs_iteration | Parameter value or gradient vs. iterations
qq_plot | QQ plots of ETA and residuals
read_nm_files | NONMEM output file import function
read_nm_model | NONMEM model file parser
read_nm_tables | NONMEM output table import function
rename.xpose_data | Add, remove or rename variables in an xpdb
res_distrib | Distribution plots of ETA and parameters
res_qq | QQ plots of ETA and residuals
res_vs_idv | Residuals plotted against the independent variable
res_vs_pred | Residuals plotted against population predictions
select.xpose_data | Add, remove or rename variables in an xpdb
set_vars | Set variable type, label or units
set_var_labels | Set variable type, label or units
set_var_types | Set variable type, label or units
set_var_units | Set variable type, label or units
slice.xpose_data | Subset datasets in an xpdb
subset_xpdb | Subset datasets in an xpdb
summarise.xpose_data | Group/ungroup and summarize variables in an xpdb
summarise_xpdb | Group/ungroup and summarize variables in an xpdb
summarize.xpose_data | Group/ungroup and summarize variables in an xpdb
summary.xpose_data | Summarizing xpose_data
template_titles | Template titles
theme_bw2 | An additional set of themes for ggplot2
theme_readable | An additional set of themes for ggplot2
theme_xp_default | A set of xpose themes
theme_xp_xpose4 | A set of xpose themes
ungroup.xpose_data | Group/ungroup and summarize variables in an xpdb
update_themes | Create xpose theme
vpc | Visual predictive checks
vpc_data | Visual predictive checks data
vpc_opt | Generate a list of options for VPC data generation
xpdb_ex_pk | 'xpose_data' examples
xplot_distrib | Default xpose distribution plot function
xplot_qq | Default xpose QQ plot function
xplot_scatter | Default xpose scatter plot function
xpose_data | Import NONMEM output into R
xpose_save | Save xpose plot
xp_themes | A set of xpose themes