AutoReplicationSettings
                        Create auto replication settings.
Bioavailability         Create a bioavailability for the specified
                        compartment.
CampsisModel            Create a new Campsis model.
CodeRecords             Create a list of code records.
Comment                 Create a new comment.
Compartment             Create a compartment.
Compartments            Create a list of compartments
Equation                Create a new equation.
ErrorRecord             Create ERROR code record.
IfStatement             Create a new IF-statement.
InfusionDuration        Create an infusion duration.
InfusionRate            Create an infusion rate.
InitialCondition        Create an initial condition.
LagTime                 Create a lag time for the specified
                        compartment.
LineBreak               Create a new line break.
MainRecord              Create MAIN code record.
ManualReplicationSettings
                        Create manual replication settings.
ModelStatements         Create an empty list of model statements.
Ode                     Create a new ordinary differential equation
                        (ODE).
OdeRecord               Create ODE code record.
Omega                   Create an OMEGA parameter.
OmegaBlock              Create a block of OMEGA's.
OmegaBlocks             Create a list of OMEGA blocks.
Parameters              Create a list of parameters.
Pattern                 Create a pattern.
Position                Element position in list.
Sigma                   Create a SIGMA parameter.
Theta                   Create a THETA parameter.
UnknownStatement        Create a new ordinary differential equation
                        (ODE).
VariablePattern         Create a variable pattern.
add                     Add element to list.
addRSE                  Add relative standard error (RSE) to the
                        specified parameter.
addSuffix               Generic function to add a suffix to various
                        objects like parameters, code records,
                        compartment names or a model (all previous
                        objects at the same time). This makes it an
                        extremely powerful function to combine 2 models
                        or more (using function 'add'), that have
                        similar equation, parameter or compartment
                        names.
as.data.frame           As data frame method.
assertSingleCharacterString
                        Assert the given character vector is a single
                        character string.
autoDetectNONMEM        Auto-detect special variables from NONMEM as
                        compartment properties. Bioavailabilities,
                        infusion durations/rates and lag times will be
                        automatically detected.
auto_replication_settings-class
                        Auto replication settings class.
campsis_model-class     Campsis model class.
code_record-class       Code record class. See this code record as an
                        abstract class. 2 implementations are possible:
                        - properties record (lag, duration, rate &
                        bioavailability properties) - statements record
                        (main, ode & error records)
comment-class           Comment class. A statement starting with #.
compartment-class       Compartment class.
compartment_bioavailability-class
                        Compartment bioavailability class.
compartment_infusion_duration-class
                        Compartment infusion duration class.
compartment_infusion_rate-class
                        Compartment infusion rate class.
compartment_initial_condition-class
                        Compartment initial condition class.
compartment_lag_time-class
                        Compartment lag time class.
compartment_properties-class
                        Compartment properties class.
compartment_property-class
                        Compartment property class.
compartments-class      Compartments class.
default                 Get default element from list.
delete                  Delete an element from this list.
disable                 Disable.
double_array_parameter-class
                        Double-array parameter class. This parameter
                        has 2 indexes.  It can thus be used to define
                        correlations between parameters.
duration_record-class   (Infusion)-duration record class.
equation-class          Equation class. Any statement in the form A =
                        B.
error_record-class      Error record class.
export                  Export function.
export_type-class       Export type class.
extractLhs              Extract left-hand-side expression.
extractRhs              Extract right-hand-side expression.
extractTextBetweenBrackets
                        Extract text between brackets.
f_record-class          Bioavailability record class.
find                    Find an element in list.
fixOmega                Fix omega matrix for SAME OMEGA parameters that
                        have NA values due to imperfections in Pharmpy
                        import.
getByIndex              Get element by index.
getByName               Get an element from a list by name. Never
                        return more than 1 element.
getCompartmentIndex     Get the compartment index for the specified
                        compartment name.
getNONMEMName           Get NONMEM name.
getName                 Get element name.
getNameInModel          Get the name of the given parameter in the
                        CAMPSIS model.
getNames                Get element names from list.
getOmegaBlock           Get the right block of OMEGA's.
getOmegaIndexes         Get the indexes of the omegas.
getPrefix               Get prefix.
getRecordDelimiter      Get record delimiter.
getRecordName           Get record name.
getUncertainty          Get uncertainty on the parameters.
getVarCov               Get variance-covariance matrix.
hasComment              Check if string contains CAMPSIS-style
                        comments.
hasOffDiagonalOmegas    Has off-diagonal omegas.
if_statement-class      If-statement class. Any statement in the form
                        if (condition) A = B.
indexOf                 Get the index of an element in list.
init_record-class       Init record class.
isComment               Check if string is a CAMPSIS comment (i.e. not
                        an equation).
isDiag                  Is diagonal.
isEmptyLine             Check if string is an empty line.
isEquation              Say if line in record is an equation not.
isIfStatement           Say if line in record is an IF-statement.
isMatrixPositiveDefinite
                        Is matrix positive definite. Same check as
                        'mvtnorm' does.
isODE                   Say if line(s) in record is/are ODE or not.
isRecordDelimiter       Is record delimiter. A record delimiter is any
                        line starting with [...].
isStrictRecordDelimiter
                        Is strict record delimiter. A strict record
                        delimiter is any line starting with [...] and
                        followed by nothing but spaces or a possible
                        comment.
lag_record-class        Lag record class.
line_break-class        Line-break class. A linebreak in the model.
main_record-class       Main record class.
manual_replication_settings-class
                        Manual replication settings class.
maxIndex                Max index.
minIndex                Min index.
model_statement-class   Model statement class. Any statement in a code
                        record.
model_statements-class
                        Model statements class. A list of statements.
model_suite             CAMPSIS model suite.
move                    Move element 'x' from object to a certain
                        place.
mrgsolveBlock           Convert code record for mrgsolve.
mrgsolveCapture         Get the CAPTURE block for mrgsolve.
mrgsolveCompartment     Get the compartment block for mrgsolve.
mrgsolveMain            Get the MAIN block for mrgsolve.
mrgsolveMatrix          Get the OMEGA/SIGMA matrix for mrgsolve.
mrgsolveOde             Get the ODE block for mrgsolve.
mrgsolveParam           Get the parameters block for mrgsolve.
mrgsolveTable           Get the TABLE block for mrgsolve.
mrgsolve_type-class     Mrgsolve export type class.
ode-class               ODE class. Any statement in the form
                        d/dt(A_CMT) = B.
ode_record-class        ODE record class.
omega-class             Omega parameter class.
parameter-class         Parameter class. Any parameter in a
                        pharmacometric model.
parameters-class        Parameters class.
parseIfStatement        Parse IF-statement. Assumption: 'isIfStatement'
                        method already called and returned TRUE.
parseStatements         Parse statements code and return CAMPSIS
                        statements.
pattern-class           Pattern class.
pmx_element-class       PMX element class.
pmx_position-class      PMX position class.
pmx_position_by_element-class
                        PMX position by element class.
pmx_position_by_index-class
                        PMX position by index class.
processExtraArg         Process extra arguments.
properties_record-class
                        Properties record class.
rate_record-class       (Infusion)-rate record class.
read                    Generic read method to read data from a file or
                        a folder.
read.allparameters      Read all parameters files at once.
read.campsis            Read a CAMPSIS model.
read.model              Read model file.
read.parameters         Read parameters file.
read.varcov             Read variance-covariance file.
replace                 Replace element by another in list.
replaceAll              Replace all occurrences in object.
replicate               Replicate generic object.
replicated_campsis_model-class
                        Replicated Campsis model class.
replication_settings-class
                        Replication settings interface.
rxodeCode               Get code for rxode2
rxodeMatrix             Get the OMEGA/SIGMA matrix for rxode2.
rxodeParams             Get the parameters vector for rxode2.
rxode_type-class        RxODE/rxode2 export type class.
select                  Get a subset of an object.
setMinMax               Set the minimum and maximum value on a model
                        parameter.
shiftOmegaIndexes       Shift OMEGA indexes.
sigma-class             Sigma parameter class.
single_array_parameter-class
                        Single-array parameter class. This parameter
                        has a single index value.
sort                    Sort the specified list.
standardise             Standardise.
statements_record-class
                        Statements record class.
theta-class             Theta parameter class.
toString                ToString generic method.
trim                    Trim character vector. Remove all leading and
                        trailing spaces.
unknown_statement-class
                        Unknown statement class. Any statement not
                        recognized by campsismod.
updateCompartments      Update compartments list from the persisted
                        records. Exported especially for package
                        'campsistrans'. However, this method should not
                        be called.
variable_pattern-class
                        Variable pattern class.
write                   Write generic object to files.
writeParameters         Write subset of parameters (theta, omega or
                        sigma).
writeVarcov             Write variance-covariance matrix.
