Package: goat
Type: Package
Title: Gene Set Analysis Using the Gene Set Ordinal Association Test
Version: 1.1.2
Authors@R: 
    person(given = "Frank",
           family = "Koopmans",
           role = c("aut", "cre"),
           email = "ftwkoopmans@gmail.com",
           comment = c(ORCID = "0000-0002-4973-5732"))
Description: 
    Perform gene set enrichment analyses using the Gene set Ordinal
    Association Test (GOAT) algorithm and visualize your
    results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.
URL: https://github.com/ftwkoopmans/goat/
License: Apache License (>= 2)
Depends: R (>= 4.1.0), dplyr (>= 1.0.3)
Imports: tibble (>= 3.0.0), tidyselect (>= 1.2.0), tidyr (>= 1.1.2),
        data.table (>= 1.14.0), Matrix (>= 1.4-0), readxl (>= 1.4.1),
        writexl (>= 1.4.1), Rcpp (>= 1.0.9), vctrs (>= 0.3.8), MonoPoly
        (>= 0.3-10), ggplot2 (>= 3.3.0), pheatmap (>= 1.0.8), treemap
        (>= 2.4), igraph (>= 1.2.5), ggraph (>= 2.0.0)
Suggests: AnnotationDbi, GO.db, org.Hs.eg.db, org.Pt.eg.db,
        org.Mmu.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Dr.eg.db,
        org.Dm.eg.db, org.Ce.eg.db, fgsea, testthat (>= 3.0.0)
LinkingTo: Rcpp
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.1
Config/testthat/edition: 3
Language: en-US
NeedsCompilation: yes
Packaged: 2025-02-22 12:53:46 UTC; frank
Author: Frank Koopmans [aut, cre] (<https://orcid.org/0000-0002-4973-5732>)
Maintainer: Frank Koopmans <ftwkoopmans@gmail.com>
Repository: CRAN
Date/Publication: 2025-02-22 13:10:02 UTC
Built: R 4.3.3; aarch64-apple-darwin20; 2025-02-22 14:44:03 UTC; unix
Archs: goat.so.dSYM
