.fastdist               Calculate Genotypic Distances
.maf                    Calculate Minor Allele Frequency (MAF)
.simulateHalfsib        Simulate Half-Sibling Genotypes
aio                     All-in-one Phasing
bmh                     Block Partitioning
co                      Crossover Detection
cs                      Chromosome Splitter
genotypes               Example of Genotype Data Set
hbp                     Haplotype Blocks of Phased Data
hh                      Heatmap of Half-sibs
hsphase-package         Phasing, Pedigree Reconstruction, Sire
                        Imputation and Recombination Events
                        Identification for Half-sib Families
hss                     Half-sib Family Splitter
imageplot               Image Plot of Blocking Structure
impute                  Impute of Low Density SNP Marker to High
                        Density (Paternal Strand)
map                     Example Map File for Genetic Data
ohd                     Opposing Homozygote Detection
ohg                     Matrix of Opposing Homozygotes
ohplot                  Opposing Homozygotes Plot
para                    Parallel Analysis of Data
pedigree                Example Pedigree Data Set
pedigreeNaming          Fix Pedigree Errors
phf                     Half-Sib Family Phasing
pm                      Probability Matrix
pogc                    Parent Offspring Group Constructor
readGenotype            Read and Check the Genotype File
recombinations          Recombination Number
rplot                   Recombination Plot
rpoh                    Reconstruct Pedigree Based on Matrix of
                        Opposing Homozygotes
ssp                     Sire Imputation and Phasing
