R: Bayesian Output Analysis Program (BOA) for MCMC

# Bayesian Output Analysis Program (BOA) for MCMC

## Documentation for package ‘boa’ version 1.1.9

- DESCRIPTION file.

## Help Pages

boa.acf | Autocorrelation Function
boa.chain | Session Lists of MCMC Sequences
boa.chain.add | Add MCMC Sequence
boa.chain.collapse | Concatenate MCMC Sequences
boa.chain.del | Delete MCMC Sequences
boa.chain.eval | Formulate New Parameter
boa.chain.gandr | Gelman and Rubin Convergence Diagnostics
boa.chain.import | Import MCMC Sequence
boa.chain.info | Information about MCMC Sequences
boa.chain.reset | Reset MCMC Sequences
boa.chain.subset | Subset MCMC Sequences
boa.chain.support | Set Support for Parameters
boa.geweke | Geweke Convergence Diagnostics
boa.handw | Heidelberger and Welch Convergence Diagnostics
boa.hpd | Highest Probability Density Interval
boa.importASCII | Import ASCII Data
boa.importBUGS | Import BUGS Data
boa.importMatrix | Import ASCII Data
boa.init | Start Session
boa.load | Load Session
boa.menu | Interactive BOA Menu
boa.par | Global Parameters
boa.plot | Plot Parameters in MCMC Sequences
boa.plot.acf | Plot Autocorrelation Function
boa.plot.bandg | Plot Brooks and Gelman Multivariate Shrink Factors
boa.plot.density | Plot Density Functions
boa.plot.gandr | Plot Gelman and Rubin Shrink Factors
boa.plot.geweke | Plot Geweke Convergence Diagnostics
boa.plot.history | Plot Parameter Estimation Histories
boa.plot.par | Set Plotting Parameters
boa.plot.title | Add Plot Title
boa.plot.trace | Plot Trace Histories
boa.print.acf | Print Autocorrelation Functions
boa.print.cor | Print Correlation Matrices
boa.print.gandr | Print Gelman and Rubin Convergence Diagnostics
boa.print.geweke | Print Geweke Convergence Diagnostics
boa.print.handw | Print Heidelberger and Welch Convergence Diagnostics
boa.print.hpd | Print Highest Probability Density Intervals
boa.print.info | Print Information about MCMC Sequences
boa.print.par | Print Global Parameters' Descriptions and Current Values
boa.print.randl | Print Raftery and Lewis Convergence Diagnostics
boa.print.stats | Print Summary Statistics
boa.quit | Quit Session
boa.randl | Raftery and Lewis Convergence Diagnostics
boa.save | Save Session
boa.stats | Summary Statistics
line | BUGS Line Example
line1 | BUGS Line Example
line2 | BUGS Line Example