medfate-package	medfate-package
.copy_model_output	communication
aspwb	aspwb
aspwbInput	aspwb
aspwb_day	aspwb
biophysics	biophysics
biophysics_irradianceToPhotonFlux	biophysics
biophysics_leafTemperature	biophysics
biophysics_leafTemperature2	biophysics
biophysics_leafVapourPressure	biophysics
biophysics_radiationDiurnalPattern	biophysics
biophysics_temperatureDiurnalPattern	biophysics
biophysics_waterDynamicViscosity	biophysics
carbon	carbon
carbon_abovegroundHeartwoodStructuralBiomass	carbon
carbon_abovegroundSapwoodStructuralBiomass	carbon
carbon_belowgroundHeartwoodStructuralBiomass	carbon
carbon_belowgroundSapwoodStructuralBiomass	carbon
carbon_carbonCompartments	carbon
carbon_heartwoodStructuralBiomass	carbon
carbon_leafStarchCapacity	carbon
carbon_leafStructuralBiomass	carbon
carbon_osmoticWaterPotential	carbon
carbon_relativeSapViscosity	carbon
carbon_sapwoodStarchCapacity	carbon
carbon_sapwoodStructuralBiomass	carbon
carbon_sugarConcentration	carbon
carbon_sugarStarchDynamicsLeaf	carbon
carbon_sugarStarchDynamicsStem	carbon
carbon_twigStructuralBiomass	carbon
communication	communication
decomposition_annualLitterDecompositionRate	decomposition_annualLitterDecompositionRate
decomposition_DAYCENT	decomposition_DAYCENT
decomposition_litterMetabolicFraction	decomposition_annualLitterDecompositionRate
decomposition_moistureEffect	decomposition_annualLitterDecompositionRate
decomposition_pHEffect	decomposition_annualLitterDecompositionRate
decomposition_snagFallProbability	decomposition_annualLitterDecompositionRate
decomposition_temperatureEffect	decomposition_annualLitterDecompositionRate
defaultControl	defaultControl
defaultManagementArguments	defaultManagementFunction
defaultManagementFunction	defaultManagementFunction
defaultSoilParams	defaultSoilParams
droughtStress	droughtStress
emptyforest	emptyforest
evaluation	evaluation
evaluation_metric	evaluation
evaluation_plot	evaluation
evaluation_stats	evaluation
evaluation_table	evaluation
exampleforest	forest
exampleforest2	forest
examplemeteo	examplemeteo
exampleobs	exampleobs
extract	extract
fireHazard	fireHazard
fire_barkThermalDiffusivity	fire_severity
fire_behaviour	fire_behaviour
fire_FCCS	fire_behaviour
fire_leafThermalFactor	fire_severity
fire_necrosisCriticalTemperature	fire_severity
fire_necrosisHeight	fire_severity
fire_plumeTemperature	fire_severity
fire_radialBoleNecrosis	fire_severity
fire_Rothermel	fire_behaviour
fire_severity	fire_severity
fordyn	fordyn
forest	forest
forest2aboveground	forest2aboveground
forest2belowground	forest2aboveground
forest2growthInput	forest2aboveground
forest2spwbInput	forest2aboveground
forest_mapShrubTable	forest_mapWoodyTables
forest_mapTreeTable	forest_mapWoodyTables
forest_mapWoodyTables	forest_mapWoodyTables
forest_mergeHerbs	forest_simplification
forest_mergeShrubs	forest_simplification
forest_mergeTrees	forest_simplification
forest_reduceToDominant	forest_simplification
forest_simplification	forest_simplification
fuel_FCCS	fuel_properties
fuel_properties	fuel_properties
fuel_stratification	fuel_properties
fuel_windAdjustmentFactor	fuel_windAdjustmentFactor
growth	growth
growthInput	modelInput
growth_day	growth_day
herb_foliarBiomass	herb_values
herb_fuelLoading	herb_values
herb_LAI	herb_values
herb_values	herb_values
hydraulics_averagePsi	hydraulics_conductancefunctions
hydraulics_averageRhizosphereResistancePercent	hydraulics_scalingconductance
hydraulics_conductancefunctions	hydraulics_conductancefunctions
hydraulics_correctConductanceForViscosity	hydraulics_conductancefunctions
hydraulics_defoliation	hydraulics_defoliation
hydraulics_E2psiAboveground	hydraulics_supplyfunctions
hydraulics_E2psiBelowground	hydraulics_supplyfunctions
hydraulics_E2psiNetwork	hydraulics_supplyfunctions
hydraulics_E2psiTwoElements	hydraulics_supplyfunctions
hydraulics_E2psiVanGenuchten	hydraulics_supplyfunctions
hydraulics_E2psiXylem	hydraulics_supplyfunctions
hydraulics_E2psiXylemUp	hydraulics_supplyfunctions
hydraulics_ECrit	hydraulics_supplyfunctions
hydraulics_EVanGenuchten	hydraulics_supplyfunctions
hydraulics_EXylem	hydraulics_supplyfunctions
hydraulics_findRhizosphereMaximumConductance	hydraulics_scalingconductance
hydraulics_initSperryNetworks	hydraulics_supplyfunctions
hydraulics_K2Psi	hydraulics_conductancefunctions
hydraulics_maximumSoilPlantConductance	hydraulics_scalingconductance
hydraulics_maximumStemHydraulicConductance	hydraulics_scalingconductance
hydraulics_proportionDefoliationSigmoid	hydraulics_defoliation
hydraulics_proportionDefoliationWeibull	hydraulics_defoliation
hydraulics_psi2K	hydraulics_conductancefunctions
hydraulics_psi2Weibull	hydraulics_conductancefunctions
hydraulics_psiCrit	hydraulics_conductancefunctions
hydraulics_referenceConductivityHeightFactor	hydraulics_scalingconductance
hydraulics_regulatedPsiTwoElements	hydraulics_supplyfunctions
hydraulics_regulatedPsiXylem	hydraulics_supplyfunctions
hydraulics_rootxylemConductanceProportions	hydraulics_scalingconductance
hydraulics_scalingconductance	hydraulics_scalingconductance
hydraulics_soilPlantResistancesSigmoid	hydraulics_scalingconductance
hydraulics_soilPlantResistancesWeibull	hydraulics_scalingconductance
hydraulics_supplyFunctionAboveground	hydraulics_supplyfunctions
hydraulics_supplyFunctionBelowground	hydraulics_supplyfunctions
hydraulics_supplyFunctionNetwork	hydraulics_supplyfunctions
hydraulics_supplyFunctionOneXylem	hydraulics_supplyfunctions
hydraulics_supplyFunctionPlot	hydraulics_supplyfunctions
hydraulics_supplyfunctions	hydraulics_supplyfunctions
hydraulics_supplyFunctionThreeElements	hydraulics_supplyfunctions
hydraulics_supplyFunctionTwoElements	hydraulics_supplyfunctions
hydraulics_taperFactorSavage	hydraulics_scalingconductance
hydraulics_terminalConduitRadius	hydraulics_scalingconductance
hydraulics_vanGenuchtenConductance	hydraulics_conductancefunctions
hydraulics_vulnerabilityCurvePlot	hydraulics_conductancefunctions
hydraulics_xylemConductance	hydraulics_conductancefunctions
hydraulics_xylemConductanceSigmoid	hydraulics_conductancefunctions
hydraulics_xylemPsi	hydraulics_conductancefunctions
hydraulics_xylemPsiSigmoid	hydraulics_conductancefunctions
hydrology_agricultureWaterInputs	hydrology_verticalInputs
hydrology_herbaceousTranspiration	hydrology_soilEvaporation
hydrology_infiltration	hydrology_infiltration
hydrology_infiltrationAmount	hydrology_infiltration
hydrology_infiltrationBoughton	hydrology_infiltration
hydrology_infiltrationGreenAmpt	hydrology_infiltration
hydrology_infiltrationRepartition	hydrology_infiltration
hydrology_interception	hydrology_interception
hydrology_interceptionPlot	hydrology_interception
hydrology_rainfallIntensity	hydrology_interception
hydrology_rainInterception	hydrology_interception
hydrology_snowMelt	hydrology_verticalInputs
hydrology_soilEvaporation	hydrology_soilEvaporation
hydrology_soilEvaporationAmount	hydrology_soilEvaporation
hydrology_soilWaterBalance	hydrology_soilWaterBalance
hydrology_verticalInputs	hydrology_verticalInputs
hydrology_waterInputs	hydrology_verticalInputs
initSureauNetworks	sureau_ecos
light_advanced	light_advanced
light_basic	light_basic
light_cohortAbsorbedSWRFraction	light_basic
light_cohortSunlitShadeAbsorbedRadiation	light_advanced
light_directionalExtinctionCoefficient	light_advanced
light_instantaneousLightExtinctionAbsortion	light_advanced
light_layerDiffuseIrradianceFraction	light_advanced
light_layerDirectIrradianceFraction	light_advanced
light_layerSunlitFraction	light_advanced
light_leafAngleBetaParameters	light_advanced
light_leafAngleCDF	light_advanced
light_longwaveRadiationSHAW	light_advanced
light_PARcohort	light_basic
light_PARground	light_basic
light_SWRground	light_basic
medfate	medfate-package
modelInput	modelInput
modifyCohortParams	modifyParams
modifyInputParams	modifyParams
modifyParams	modifyParams
modifySpParams	modifyParams
moisture	moisture
moisture_apoplasticPsi	moisture
moisture_apoplasticRWC	moisture
moisture_leafWaterCapacity	moisture
moisture_pressureVolumeCurvePlot	moisture
moisture_sapwoodWaterCapacity	moisture
moisture_symplasticPsi	moisture
moisture_symplasticRWC	moisture
moisture_tissueRWC	moisture
moisture_turgorLossPoint	moisture
mortality_dailyProbability	mortality_dailyProbability
multiple_runs	optimization
optimization	optimization
optimization_evaluation_function	optimization
optimization_evaluation_multicohort_function	optimization
optimization_function	optimization
optimization_multicohort_function	optimization
pheno_leafDevelopmentStatus	pheno_updateLeaves
pheno_leafSenescenceStatus	pheno_updateLeaves
pheno_updateLeaves	pheno_updateLeaves
pheno_updatePhenology	pheno_updateLeaves
photo	photo
photo_electronLimitedPhotosynthesis	photo
photo_GammaTemp	photo
photo_JmaxTemp	photo
photo_KmTemp	photo
photo_leafPhotosynthesisFunction	photo
photo_leafPhotosynthesisFunction2	photo
photo_multilayerPhotosynthesisFunction	photo
photo_photosynthesis	photo
photo_photosynthesisBaldocchi	photo
photo_rubiscoLimitedPhotosynthesis	photo
photo_sunshadePhotosynthesisFunction	photo
photo_VmaxTemp	photo
plant_basalArea	plant_values
plant_characterParameter	plant_values
plant_cover	plant_values
plant_crownBaseHeight	plant_values
plant_crownLength	plant_values
plant_crownRatio	plant_values
plant_density	plant_values
plant_equilibriumLeafLitter	plant_values
plant_equilibriumSmallBranchLitter	plant_values
plant_foliarBiomass	plant_values
plant_fuelLoading	plant_values
plant_height	plant_values
plant_ID	plant_values
plant_individualArea	plant_values
plant_LAI	plant_values
plant_largerTreeBasalArea	plant_values
plant_parameter	plant_values
plant_phytovolume	plant_values
plant_species	plant_values
plant_speciesName	plant_values
plant_values	plant_values
plant_water	moisture
plot.aspwb	plot.spwb
plot.fordyn	plot.spwb
plot.forest	plot.forest
plot.growth	plot.spwb
plot.growth_day	plot.spwb_day
plot.pwb	plot.spwb
plot.pwb_day	plot.spwb_day
plot.soil	plot.soil
plot.spwb	plot.spwb
plot.spwb_day	plot.spwb_day
poblet_trees	poblet_trees
print.summary.forest	summary.forest
pwb	pwb
regeneration	regeneration
regeneration_germination	regeneration
regeneration_recruitment	regeneration
regeneration_recruitment_daily	regeneration
regeneration_resprouting	regeneration
regeneration_seedlings	regeneration
regeneration_seedlings_daily	regeneration
regeneration_seedmortality	regeneration
regeneration_seedproduction	regeneration
regeneration_seedrefill	regeneration
resetInputs	resetInputs
resistances	resistances
root	root
root_coarseRootLengths	root
root_coarseRootLengthsFromVolume	root
root_coarseRootSoilVolume	root
root_coarseRootSoilVolumeFromConductance	root
root_conicDistribution	root
root_fineRootAreaIndex	root
root_fineRootBiomass	root
root_fineRootHalfDistance	root
root_fineRootRadius	root
root_fineRootSoilVolume	root
root_horizontalProportions	root
root_individualRootedGroundArea	root
root_ldrDistribution	root
root_rhizosphereMaximumConductance	root
root_specificRootSurfaceArea	root
runners	runners-module
semi_implicit_integration	sureau_ecos
SFM_metric	SFM_metric
shinyplot	shinyplot
shinyplot.aspwb	shinyplot
shinyplot.fordyn	shinyplot
shinyplot.forest	plot.forest
shinyplot.growth	shinyplot
shinyplot.growth_day	shinyplot
shinyplot.pwb	shinyplot
shinyplot.pwb_day	shinyplot
shinyplot.spwb	shinyplot
shinyplot.spwb_day	shinyplot
shrub2forest	tree2forest
soil	soil
soil_campbellParamsClappHornberger	soil_texture
soil_capacitance	soil_texture
soil_conductivity	soil_texture
soil_conductivityCurvePlot	soil_retentionCurvePlot
soil_psi	soil_texture
soil_psi2cVG	soil_texture
soil_psi2kVG	soil_texture
soil_psi2thetaSX	soil_texture
soil_psi2thetaVG	soil_texture
soil_redefineLayers	soil_redefineLayers
soil_retentionCurvePlot	soil_retentionCurvePlot
soil_rockWeight2Volume	soil_texture
soil_saturatedConductivitySX	soil_texture
soil_saturatedWaterDepth	soil_texture
soil_temperatureChange	soil_thermodynamics
soil_temperatureGradient	soil_thermodynamics
soil_texture	soil_texture
soil_thermalCapacity	soil_thermodynamics
soil_thermalConductivity	soil_thermodynamics
soil_thermodynamics	soil_thermodynamics
soil_theta	soil_texture
soil_theta2psiSX	soil_texture
soil_theta2psiVG	soil_texture
soil_thetaFC	soil_texture
soil_thetaSAT	soil_texture
soil_thetaSATSX	soil_texture
soil_thetaWP	soil_texture
soil_unsaturatedConductivitySX	soil_texture
soil_USDAType	soil_texture
soil_vanGenuchtenParamsCarsel	soil_texture
soil_vanGenuchtenParamsToth	soil_texture
soil_water	soil_texture
soil_waterExtractable	soil_texture
soil_waterFC	soil_texture
soil_waterPsi	soil_texture
soil_waterSAT	soil_texture
soil_waterWP	soil_texture
species_basalArea	species_values
species_characterParameter	species_values
species_cover	species_values
species_density	species_values
species_foliarBiomass	species_values
species_fuelLoading	species_values
species_LAI	species_values
species_parameter	species_values
species_values	species_values
SpParams	SpParams
SpParamsDefinition	SpParams
SpParamsMED	SpParams
spwb	spwb
spwbInput	modelInput
spwb_day	spwb_day
stand_basalArea	stand_values
stand_dominantTreeDiameter	stand_values
stand_dominantTreeHeight	stand_values
stand_dominantTreeSpecies	stand_values
stand_foliarBiomass	stand_values
stand_fuelLoading	stand_values
stand_hartBeckingIndex	stand_values
stand_LAI	stand_values
stand_meanTreeHeight	stand_values
stand_quadraticMeanTreeDiameter	stand_values
stand_shrubVolume	stand_values
stand_treeDensity	stand_values
stand_values	stand_values
summary.aspwb	summary.spwb
summary.fordyn	summary.spwb
summary.forest	summary.forest
summary.growth	summary.spwb
summary.pwb	summary.spwb
summary.soil	soil
summary.spwb	summary.spwb
sureau_ecos	sureau_ecos
trait_family_means	TaxonTraitMeans
transp_maximumTranspirationModel	transp_maximumTranspirationModel
transp_modes	transp_modes
transp_profitMaximization	transp_stomatalregulation
transp_stomatalregulation	transp_stomatalregulation
transp_transpirationGranier	transp_modes
transp_transpirationSperry	transp_modes
transp_transpirationSureau	transp_modes
tree2forest	tree2forest
utils_ldrExploration	utils_ldrOptimization
utils_ldrOptimization	utils_ldrOptimization
utils_rockOptimization	utils_rockOptimization
vprofile_fuelBulkDensity	vprofile_leafAreaDensity
vprofile_leafAreaDensity	vprofile_leafAreaDensity
vprofile_PARExtinction	vprofile_leafAreaDensity
vprofile_rootDistribution	vprofile_leafAreaDensity
vprofile_SWRExtinction	vprofile_leafAreaDensity
vprofile_windExtinction	vprofile_leafAreaDensity
waterUseEfficiency	waterUseEfficiency
wind	wind
wind_canopyTurbulence	wind
wind_canopyTurbulenceModel	wind
woodformation	woodformation
woodformation_growRing	woodformation
woodformation_initRing	woodformation
woodformation_relativeExpansionRate	woodformation
woodformation_relativeGrowthRate	woodformation
woodformation_temperatureEffect	woodformation
