R: Bioinformatics Library for Integrated Tools

# Bioinformatics Library for Integrated Tools

## Documentation for package ‘blit’ version 0.2.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

allele_counter | Run alleleCount
appmamba | Manage Environment with 'micromamba'
appmamba_rc | Manage Environment with 'micromamba'
arg | Deliver arguments of command
arg0 | Deliver arguments of command
cellranger | Run cellranger
cmd_background | Execute command
cmd_conda | Setup the context for the command
cmd_envpath | Setup the context for the command
cmd_envvar | Setup the context for the command
cmd_help | Execute command
cmd_on_exit | Schedule expressions to run
cmd_on_fail | Schedule expressions to run
cmd_on_start | Schedule expressions to run
cmd_on_succeed | Schedule expressions to run
cmd_parallel | Execute a list of commands
cmd_run | Execute command
cmd_wd | Setup the context for the command
Command | R6 Class to prepare command parameters.
conda | Run conda
exec | Invoke a System Command
fastq_pair | FASTQ PAIR
fastq_read_pair | FASTQ PAIR
gistic2 | Run GISTIC2
install_appmamba | Manage Environment with 'micromamba'
kraken2 | Running Kraken2
kraken_tools | KrakenTools is a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs.
make_command | Helper function to create new command.
perl | Perl is a highly capable, feature-rich programming language with over 36 years of development.
pyscenic | Run pyscenic
python | Python is a programming language that lets you work quickly and integrate systems more effectively.
samtools | Python is a programming language that lets you work quickly and integrate systems more effectively.
seqkit | Run seqkit
trust4 | TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
trust4_gene_names | TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
trust4_imgt_annot | TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
uninstall_appmamba | Manage Environment with 'micromamba'