A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
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Documentation for package ‘RGraphSpace’ version 1.5.0
Help Pages
-- A --
| annotation_gspace | Annotate a GraphSpace Plot with an Image |
| annotation_gspace_image | Annotate a GraphSpace Plot with an Image |
| as.GraphSpace | Convert objects to GraphSpace |
| as.GraphSpace.data.frame | Convert objects to GraphSpace |
| as.GraphSpace.default | Convert objects to GraphSpace |
| as.GraphSpace.igraph | Convert objects to GraphSpace |
| as.GraphSpace.Seurat | Convert objects to GraphSpace |
| as.GraphSpace.tbl_graph | Convert objects to GraphSpace |
| as.igraph.GraphSpace | Accessors and attribute utilities for GraphSpace objects |
| as_colorraster | Map numeric values to a color raster |
-- C --
| cropGraphSpace | Normalize node coordinates to graph and image spaces |
| cropGraphSpace-method | Normalize node coordinates to graph and image spaces |
-- E --
| edgespace_handler | Draw edge elements in a 2D graph layout |
-- G --
| GeomEdgeSpace | GeomEdgeSpace: a ggplot2 prototype for GraphSpace-class methods |
| GeomNodeSpace | GeomNodeSpace: a ggplot2 prototype for GraphSpace-class methods |
| geom_edgespace | Draw edge elements in a 2D graph layout |
| geom_graphspace | Convenience wrapper for node and edge geoms |
| geom_nodespace | Draw node elements in a 2D graph layout |
| getGraphSpace | Accessors for fetching slots from a GraphSpace object |
| getGraphSpace-method | Accessors for fetching slots from a GraphSpace object |
| ggplot-GraphSpace | Using ggplot2 with GraphSpace objects |
| ggplot.GraphSpace | Using ggplot2 with GraphSpace objects |
| GraphSpace | Create a GraphSpace object |
| GraphSpace-accessors | Accessors and attribute utilities for GraphSpace objects |
| GraphSpace-class | GraphSpace: An S4 class for igraph objects |
| GraphSpace-method | Create a GraphSpace object |
| GraphSpace-subscript | Subscript operators for GraphSpace objects |
| gs_add_edges | Add edges to a GraphSpace object |
| gs_add_edges-method | Add edges to a GraphSpace object |
| gs_add_edges<- | Add edges to a GraphSpace object |
| gs_add_edges<--method | Add edges to a GraphSpace object |
| gs_add_features | Manipulate node features in a GraphSpace object |
| gs_add_nodes | Add nodes to a GraphSpace object |
| gs_add_nodes-method | Add nodes to a GraphSpace object |
| gs_add_nodes<- | Add nodes to a GraphSpace object |
| gs_add_nodes<--method | Add nodes to a GraphSpace object |
| gs_ecount | Accessors and attribute utilities for GraphSpace objects |
| gs_ecount-method | Accessors and attribute utilities for GraphSpace objects |
| gs_edges | Accessors and attribute utilities for GraphSpace objects |
| gs_edges-method | Accessors and attribute utilities for GraphSpace objects |
| gs_edge_attr | Accessors and attribute utilities for GraphSpace objects |
| gs_edge_attr-method | Accessors and attribute utilities for GraphSpace objects |
| gs_edge_attr<- | Accessors and attribute utilities for GraphSpace objects |
| gs_edge_attr<--method | Accessors and attribute utilities for GraphSpace objects |
| gs_fdata | Accessors and attribute utilities for GraphSpace objects |
| gs_fdata-method | Accessors and attribute utilities for GraphSpace objects |
| gs_fdata<- | Accessors and attribute utilities for GraphSpace objects |
| gs_fdata<--method | Accessors and attribute utilities for GraphSpace objects |
| gs_features | Accessors and attribute utilities for GraphSpace objects |
| gs_features-method | Accessors and attribute utilities for GraphSpace objects |
| gs_features-utils | Manipulate node features in a GraphSpace object |
| gs_fetch_features | Manipulate node features in a GraphSpace object |
| gs_graph | Accessors and attribute utilities for GraphSpace objects |
| gs_graph-method | Accessors and attribute utilities for GraphSpace objects |
| gs_image | Accessors and attribute utilities for GraphSpace objects |
| gs_image-method | Accessors and attribute utilities for GraphSpace objects |
| gs_image<- | Accessors and attribute utilities for GraphSpace objects |
| gs_image<--method | Accessors and attribute utilities for GraphSpace objects |
| gs_image_toy | Toy 'GraphSpace' object |
| gs_names | Accessors and attribute utilities for GraphSpace objects |
| gs_names-method | Accessors and attribute utilities for GraphSpace objects |
| gs_nfeatures | Accessors and attribute utilities for GraphSpace objects |
| gs_nfeatures-method | Accessors and attribute utilities for GraphSpace objects |
| gs_nodes | Accessors and attribute utilities for GraphSpace objects |
| gs_nodes-method | Accessors and attribute utilities for GraphSpace objects |
| gs_subset | Filter nodes and edges in a GraphSpace object |
| gs_subset_edges | Filter nodes and edges in a GraphSpace object |
| gs_subset_nodes | Filter nodes and edges in a GraphSpace object |
| gs_vcount | Accessors and attribute utilities for GraphSpace objects |
| gs_vcount-method | Accessors and attribute utilities for GraphSpace objects |
| gs_vertex_attr | Accessors and attribute utilities for GraphSpace objects |
| gs_vertex_attr-method | Accessors and attribute utilities for GraphSpace objects |
| gs_vertex_attr<- | Accessors and attribute utilities for GraphSpace objects |
| gs_vertex_attr<--method | Accessors and attribute utilities for GraphSpace objects |
| gtoy1 | Toy 'igraph' objects |
| gtoy2 | Toy 'igraph' objects |
| gtoys | Toy 'igraph' objects |
-- I --
| inject_nodespace | Dynamic Scale Injection for Edge Clipping |
-- N --
| names | Accessors and attribute utilities for GraphSpace objects |
| names-method | Accessors and attribute utilities for GraphSpace objects |
| nodespace_handler | Draw node elements in a 2D graph layout |
| normalizeGraphSpace | Normalize node coordinates to graph and image spaces |
| normalizeGraphSpace-method | Normalize node coordinates to graph and image spaces |
-- P --
| plot.GraphSpace | Plot GraphSpace objects |
| plotGraphSpace | Wrapper function to plot GraphSpace objects in ggplot2 |
| plotGraphSpace-method | Wrapper function to plot GraphSpace objects in ggplot2 |
-- S --
| StatEdgeSpace | Attribute Processing for GeomEdgeSpace |
| StatNodeSpace | Attribute Processing for GeomNodeSpace |
| summary-method | Summarise a GraphSpace object |
-- T --
| theme_gspace | RGraphSpace ggplot2 themes |
| theme_gspace_coords | RGraphSpace ggplot2 themes |
| theme_gspace_legend | RGraphSpace ggplot2 themes |
| theme_gspace_th0 | RGraphSpace ggplot2 themes |
| theme_gspace_th1 | RGraphSpace ggplot2 themes |
| theme_gspace_th2 | RGraphSpace ggplot2 themes |
| theme_gspace_th3 | RGraphSpace ggplot2 themes |
-- U --
| updateGraphSpace | Update a GraphSpace object |
| updateGraphSpace-method | Update a GraphSpace object |
-- misc --
| $-method | Accessors and attribute utilities for GraphSpace objects |
| $<--method | Accessors and attribute utilities for GraphSpace objects |
| [-method | Subscript operators for GraphSpace objects |
| [[-method | Subscript operators for GraphSpace objects |
| [[<--method | Accessors and attribute utilities for GraphSpace objects |