R: Tidy, 'ggplot2'-Native Visualization for Genomic Variants

# Tidy, 'ggplot2'-Native Visualization for Genomic Variants

## Documentation for package ‘ggvariant’ version 0.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ggvariant-package | ggvariant: Tidy, ggplot2-Native Visualization for Genomic Variants
coerce_variants | Coerce a plain data frame to a 'gvf' object
ggvariant | ggvariant: Tidy, ggplot2-Native Visualization for Genomic Variants
gvf-methods | Print and summarise 'gvf' objects
gv_palette | ggvariant colour palettes
plot_consequence_summary | Consequence summary bar chart
plot_lollipop | Lollipop plot of variants along a gene
plot_oncoprint | Oncoprint / waterfall plot of variants across samples
plot_tmb | Tumour mutational burden bar chart
plot_variant_spectrum | Mutational spectrum (SBS) bar chart
plot_waterfall | Oncoprint / waterfall plot of variants across samples
print.gvf | Print and summarise 'gvf' objects
print.summary.gvf | Print and summarise 'gvf' objects
read_vcf | Read a VCF file into a tidy variant data frame
summary.gvf | Print and summarise 'gvf' objects
theme_ggvariant | ggvariant ggplot2 theme