Single Cell Oriented Reconstruction of PANDA Individually Optimized Networks


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Documentation for package ‘SCORPION’ version 1.3.3

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circosEdges Circos plot of differential network edges
enrichEdges Gene set enrichment analysis of TF-target edges
maEdges Meta-analysis of TF-target edges across studies
regressEdges Regression analysis of edges across ordered conditions
runSCORPION Run SCORPION across cell groups and return combined networks
scorpion Build gene regulatory networks from single-cell RNA-seq data using PANDA
scorpionTest Example single-cell colorectal cancer data for SCORPION
testEdges Test edges from SCORPION networks