Package: epiphy
Type: Package
Title: Analysis of Plant Disease Epidemics
Version: 0.5.0
Authors@R: c(
    person("Christophe", "Gigot", email = "ch.gigot@gmail.com",
    role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-1748-2902")),
    person("Adam H.", "Sparks", role = "ctb"),
    person("Katrin", "Leinweber", role = "ctb")
    )
Description: A toolbox to make it easy to analyze plant disease epidemics. It
    provides a common framework for plant disease intensity data recorded over
    time and/or space. Implemented statistical methods are currently mainly
    focused on spatial pattern analysis (e.g., aggregation indices, Taylor and
    binary power laws, distribution fitting, SADIE and 'mapcomp' methods). See
    Laurence V. Madden, Gareth Hughes, Franck van den Bosch (2007)
    <doi:10.1094/9780890545058> for further information on these methods.
    Several data sets that were mainly published in plant disease epidemiology
    literature are also included in this package.
License: MIT + file LICENSE
URL: https://github.com/chgigot/epiphy,
        https://chgigot.github.io/epiphy/
BugReports: https://github.com/chgigot/epiphy/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
LinkingTo: Rcpp
Depends: R (>= 4.0)
Imports: stats, methods, utils, grDevices, ggplot2, transport, msm,
        pbapply, Rcpp
Suggests: magrittr, dplyr, tidyr, spdep, emdist, vegan, MASS, emdbook,
        knitr, rmarkdown
Collate: 'RcppExports.R' 'betabinom.R' 'data.R' 'utils.R'
        'mle-factory.R' 'epiphy.R' 'intensity-classes.R'
        'distr-fitting.R' 'indices.R' 'mapcomp.R' 'power-law.R'
        'sadie.R' 'spatial-hier.R'
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2023-11-15 07:43:36 UTC; tof
Author: Christophe Gigot [aut, cre, cph]
    (<https://orcid.org/0000-0002-1748-2902>),
  Adam H. Sparks [ctb],
  Katrin Leinweber [ctb]
Maintainer: Christophe Gigot <ch.gigot@gmail.com>
Repository: CRAN
Date/Publication: 2023-11-16 11:20:10 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-28 17:07:27 UTC; unix
Archs: epiphy.so.dSYM
