* using log directory 'd:/Rcompile/CRANpkg/local/4.4/houba.Rcheck'
* using R version 4.4.3 Patched (2026-02-12 r89426 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'houba/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'houba' version '0.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'houba' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [3s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [9s] ERROR
  Running 'apply.r' [1s]
  Running 'arithmetic.r' [1s]
  Running 'as-array.r' [1s]
  Running 'colSums.r' [1s]
  Running 'copy.r' [1s]
  Running 'create.r' [1s]
  Running 'dim.r' [1s]
  Running 'extract-replace.r' [1s]
  Running 'inplace.r' [1s]
  Running 'marray.r' [1s]
  Running 'restore.r' [1s]
Running the tests in 'tests/create.r' failed.
Complete output:
  > # Various tests about object creation and manipulation
  > require(houba)
  Loading required package: houba
  > 
  > # float mmatrix ------------------------
  > A <- mmatrix("float", 10, 20)
  > a <- as.matrix(A)
  > stopifnot(typeof(a) == "double")
  > 
  > # set max size
  > houba(max.size = 10)
  $max.size
  [1] 10
  
  > stopifnot( typeof(A[1:10]) == "double" )
  > stopifnot( typeof(A[1:11]) == "S4" )
  > 
  > # assignement and subsetting
  > A[1,1] <- 12
  > A[3,] <- 1.34
  > stopifnot( all(abs(as.matrix(A[1:3, 1:2] - c(12, 0, 1.34, 0, 0, 1.34))) < 1e-6)  )
  > 
  > A[5] <- pi
  > stopifnot( all(abs(as.vector(A[,1] - c(12, 0, 1.34, 0, pi, 0, 0, 0, 0, 0))) < 1e-6) )
  > 
  > # int mmatrix ---------------------------
  > B <- mmatrix("int", 10, 20)
  > b <- as.matrix(B)
  > stopifnot(typeof(b) == "integer")
  > 
  > # assignement and subsetting
  > B[1,1] <- 12
  > B[3,] <- 1.34
  > stopifnot( all(as.matrix(B[1:3, 1:2]) == c(12L, 0L, 1L, 0L, 0L, 1L)) )
  > 
  > B[5] <- 2
  > stopifnot( all(as.vector(B[5, 1:3]) == c(2L, 0L, 0L)) )
  > 
  > # assignement with other mmatrix values
  > houba(max.size = 0) # force non conversion to R 
  $max.size
  [1] 0
  
  > B[2,] <- A[3,]
  > stopifnot( all(as.vector(B[2, 1:4]) == c(1L, 1L, 1L, 1L)) )
  > 
  > B[5] <- A[3]
  > stopifnot( all(as.vector(B[5, 1:3]) == c(1L, 0L, 0L)) )
  > 
  > # double mvector -------------------------
  > V <- mvector("double", 10)
  > v <- as.vector(V)
  > V[1:4] <- pi
  > stopifnot( all(as.vector(V[3:6]) == c(pi, pi, 0, 0)) ) 
  > 
  > # int array --------------------------
  > C <- marray("int", 2:4)
  > C[,,1] <- 7
  > C[,2,] <- B[5]
  Error in `[<-`(`*tmp*`, , 2, , value = new("mvector", ptr = <pointer: 0x000001bf144f97f0>,  : 
    argument is missing, with no default
  Calls: [<- -> [<- -> myMissing
  Execution halted
Running the tests in 'tests/marray.r' failed.
Complete output:
  > require(houba)
  Loading required package: houba
  > 
  > a <- mvector("int", 2)
  > a[2] <- 1
  > stopifnot( a[2] == 1 )
  > 
  > a <- mmatrix("float", 6, 3)
  > a[] <- 1:18
  > stopifnot( all(a[1,] == c(1, 7, 13)) )
  > 
  > a <- marray("double", 2:4)
  > a[] <- 1:24
  > stopifnot( all(a[2,1,] == c(2, 8, 14, 20)) )
  Error in a[2, 1, ] : argument is missing, with no default
  Calls: stopifnot -> [ -> [ -> myMissing
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 ERROR