* using log directory 'd:/Rcompile/CRANpkg/local/4.4/pbdMPI.Rcheck' * using R version 4.4.3 Patched (2026-02-12 r89426 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'pbdMPI/DESCRIPTION' ... OK * this is package 'pbdMPI' version '0.5-5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pbdMPI' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/4.4/pbdMPI.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'pbdMPI' ... ** package 'pbdMPI' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' make[1]: Entering directory '/d/temp/2026_04_11_01_50_00_12782/RtmpYJdPok/R.INSTALL120905e3e4a60/pbdMPI/src' echo 'MPI_ROOT = C:/Program Files/Microsoft MPI/' > Makeconf echo 'MPI_INCLUDE = ''' >> Makeconf echo 'MPI_LIB = d:/Rcompile/CRANpkg/lib/4.4/00LOCK-pbdMPI/00new/pbdMPI/libs/x64/libmsmpi64.a' >> Makeconf echo 'WIN_FLAGS = -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20' >> Makeconf echo 'HPC_EXISTS = 1' >> Makeconf echo 'SDK_EXISTS = 0' >> Makeconf echo 'INCLUDE_EXISTS = 0' >> Makeconf echo 'INC_EXISTS = 0' >> Makeconf echo 'MPI_LIB64 = ''' >> Makeconf echo 'MPI_LIB32 = ''' >> Makeconf echo 'X64_EXISTS = 0' >> Makeconf echo 'AMD64_EXISTS = 0' >> Makeconf echo 'X86_EXISTS = 0' >> Makeconf echo 'I386_EXISTS = 0' >> Makeconf sed -i 's/00LOCK.*00new\///' Makeconf gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c comm_errors.c -o comm_errors.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c comm_sort_double.c -o comm_sort_double.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c comm_sort_integer.c -o comm_sort_integer.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pkg_dl.c -o pkg_dl.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pkg_tools.c -o pkg_tools.o In file included from pkg_global.h:10, from pkg_tools.c:8: pkg_tools.c: In function 'arrange_MPI_APTS': pkg_tools.c:21:26: warning: implicit declaration of function 'R_getVarEx' [-Wimplicit-function-declaration] 21 | PROTECT(R_apts = R_getVarEx(install(MPI_APTS_R_NAME), R_GlobalEnv, (Rboolean) TRUE, R_NilValue)); | ^~~~~~~~~~ D:/RCompile/recent/R-4.4.3p/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ pkg_tools.c:21:24: warning: assignment to 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 21 | PROTECT(R_apts = R_getVarEx(install(MPI_APTS_R_NAME), R_GlobalEnv, (Rboolean) TRUE, R_NilValue)); | ^ D:/RCompile/recent/R-4.4.3p/include/Rinternals.h:371:36: note: in definition of macro 'PROTECT' 371 | #define PROTECT(s) Rf_protect(s) | ^ pkg_tools.c: In function 'get_MPI_APTS_from_R': pkg_tools.c:140:16: warning: assignment to 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 140 | R_apts = R_getVarEx(install(MPI_APTS_R_NAME), R_GlobalEnv, (Rboolean) TRUE, R_NilValue); | ^ gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd.c -o spmd.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_allgather.c -o spmd_allgather.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_allgatherv.c -o spmd_allgatherv.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_allreduce.c -o spmd_allreduce.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_alltoall.c -o spmd_alltoall.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_alltoallv.c -o spmd_alltoallv.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_bcast.c -o spmd_bcast.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_communicator.c -o spmd_communicator.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_communicator_spawn.c -o spmd_communicator_spawn.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_gather.c -o spmd_gather.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_gatherv.c -o spmd_gatherv.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_info.c -o spmd_info.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_recv.c -o spmd_recv.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_reduce.c -o spmd_reduce.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_scatter.c -o spmd_scatter.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_scatterv.c -o spmd_scatterv.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_send.c -o spmd_send.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_sendrecv.c -o spmd_sendrecv.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_sendrecv_replace.c -o spmd_sendrecv_replace.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_tool.c -o spmd_tool.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_utility.c -o spmd_utility.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spmd_wait.c -o spmd_wait.o gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I"''" -DMPI2 -DWIN -D_WIN64 -DMSMPI_NO_DEPRECATE_20 -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c zzz.c -o zzz.o dlltool --as as -k -d msmpi.def -l libmsmpi64.a -D msmpi.dll gcc -shared -s -static-libgcc -o pbdMPI.dll tmp.def comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o libmsmpi64.a -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3p/bin/x64 -lR D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: pkg_tools.o:pkg_tools.c:(.text+0x117): undefined reference to `R_getVarEx' D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: pkg_tools.o:pkg_tools.c:(.text+0x1f7): undefined reference to `R_getVarEx' collect2.exe: error: ld returned 1 exit status make[1]: Leaving directory '/d/temp/2026_04_11_01_50_00_12782/RtmpYJdPok/R.INSTALL120905e3e4a60/pbdMPI/src' make[1]: Entering directory '/d/temp/2026_04_11_01_50_00_12782/RtmpYJdPok/R.INSTALL120905e3e4a60/pbdMPI/src' make[1]: Leaving directory '/d/temp/2026_04_11_01_50_00_12782/RtmpYJdPok/R.INSTALL120905e3e4a60/pbdMPI/src' installing via 'install.libs.R' to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-pbdMPI/00new/pbdMPI ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'pbdMPI': .onLoad failed in loadNamespace() for 'pbdMPI', details: call: library.dynam("pbdMPI", pkgname, libname) error: DLL 'pbdMPI' not found: maybe not installed for this architecture? Error: loading failed Execution halted ERROR: loading failed * removing 'd:/Rcompile/CRANpkg/lib/4.4/pbdMPI' * restoring previous 'd:/Rcompile/CRANpkg/lib/4.4/pbdMPI'