| adiposity_sds |
Calculate standardized scores (SDS) for adiposity measures |
| adiposity_sds_strat |
Compute sex-stratified standardized scores (SDS) for adiposity measures |
| adipo_is |
Adipose insulin sensitivity indices (QUICKI, VAI, LAP, TyG, TG/HDL, Belfiore) |
| allostatic_load |
Allostatic Load Index |
| all_health_markers |
Compute all available HealthMarkers categories |
| all_insulin_indices |
Compute insulin sensitivity/resistance panels (fasting, OGTT, adipose, tracer/DXA) |
| alm_bmi_index |
Appendicular Lean Mass to BMI Index |
| asrs_score |
Adult ADHD Self-Report Scale scoring |
| atherogenic_indices |
Compute atherogenic indices |
| bis_score |
Barratt Impulsiveness Scale (key-driven) |
| bode_index |
BODE Index (BMI, Obstruction, Dyspnea, Exercise capacity) |
| bone_markers |
Compute Bone Health & Body-Composition Markers (HM-CS v3) |
| calc_sds |
Calculate Standard Deviation Scores (SDS; z-scores) for health markers |
| charlson_index |
Charlson Comorbidity Index (CCI) |
| ckd_stage |
CKD staging (GFR and albuminuria) and KDIGO risk |
| cognitive_score |
Cognitive composite (z-mean or PCA1) |
| corrected_calcium |
Albumin-Corrected Calcium |
| cvd_marker_aip |
Atherogenic Index of Plasma (AIP) |
| cvd_marker_ldl_particle_number |
LDL Particle Number Estimate (via ApoB) |
| cvd_risk |
Compute cardiovascular risk or marker by selected model |
| cvd_risk_ascvd |
ASCVD risk (ACC/AHA Pooled Cohort Equations) |
| cvd_risk_qrisk3 |
QRISK3 10-year risk (UK QRISK3-2017) |
| cvd_risk_scorescvd |
RiskScorescvd calculator |
| cvd_risk_stroke |
Stroke 10-year risk |
| fasting_is |
Calculate fasting-based insulin sensitivity indices |
| frailty_index |
Compute Frailty (Deficit) Index using di::di with QA and verbose summaries |
| frax_score |
FRAX 10-Year Fracture Risk Score (simplified placeholder) |
| gad7_score |
GAD-7 scoring |
| ghq12_score |
GHQ-12 scoring (Likert or binary) |
| glycemic_markers |
Calculate glycemic-, C-peptide-, and additional metabolic markers |
| health_summary |
Summarize selected numeric marker columns |
| hm_col_report |
Diagnose and report column name mapping for your data |
| hm_normalize |
Normalise marker columns in a data frame |
| hormone_markers |
Compute a suite of hormone ratio markers with QA and verbose summaries |
| iAge |
Compute a simplified Inflammatory Age Index (iAge) with QA and verbose summaries |
| impute_mice |
Impute missing values via Multiple Imputation (mice) |
| impute_missforest |
Impute missing values via random forest (missForest) |
| impute_missing |
Impute missing values in a data.frame or tibble (simple, column-wise) |
| inflammatory_markers |
Compute inflammatory indices (classic, eosinophil, or both) |
| isi_score |
Insomnia Severity Index (ISI) scoring |
| k10_score |
K10 scoring |
| k6_score |
K6 scoring |
| kidney_failure_risk |
Kidney Failure Risk Equation (KFRE, 2- and 5-year risk) |
| kyn_trp_ratio |
Kynurenine/Tryptophan Ratio (KTR) |
| lipid_markers |
Calculate lipid-panel markers, Visceral Adiposity Index (VAI), Lipid Accumulation Product (LAP), and TyG-BMI index |
| liver_fat_markers |
Liver fat surrogates: HSI and NAFLD Liver Fat Score |
| liver_markers |
Compute liver-related indices (FLI, NFS, APRI, FIB-4, BARD, ALBI, MELD-XI) with validation and diagnostics |
| marker_summary |
Summarize marker outputs |
| mdq_score |
Mood Disorder Questionnaire scoring |
| metabolic_markers |
Aggregate selected metabolic marker groups |
| metabolic_risk_features |
Calculate metabolic risk feature flags (pediatric-friendly thresholds) |
| metss |
Metabolic Syndrome Severity Score (MetSSS) |
| nfl_marker |
Neurofilament Light Chain (NfL) Biomarker |
| normalize_vec |
Normalize a numeric vector |
| nutrient_markers |
Compute a Suite of Nutrient-Based Health Markers |
| obesity_indices |
Compute anthropometric obesity & adiposity indices |
| ogtt_is |
Calculate OGTT-based insulin sensitivity indices |
| oxidative_markers |
Oxidative stress markers |
| phq9_score |
PHQ-9 / PHQ-8 scoring |
| plot_frailty_age |
Plot FI vs age (convenience wrapper) |
| psych_dx_flags |
Psychiatric diagnosis flags aggregator |
| psych_markers |
Psychometric markers dispatcher |
| psych_med_flags |
Psychiatric medication flags aggregator |
| pulmo_markers |
Calculate pulmonary function markers (FEV1/FVC, z-scores, percent predicted, LLN, etc.) |
| renal_markers |
Calculate a Suite of Renal Function, Injury, and Excretion Markers |
| saliva_markers |
Calculate saliva-based stress & glycemic markers |
| sarc_f_score |
SARC-F Sarcopenia Screening Score |
| spirometry_markers |
Spirometry markers: FEV1/FVC, LLN-based obstruction, GOLD grade, bronchodilator response |
| spq_score |
Schizotypal Personality Questionnaire (key-driven) |
| sweat_markers |
Calculate sweat-based ionic & metabolic markers |
| tracer_dxa_is |
Compute tracer/DXA-based insulin sensitivity indices |
| urine_markers |
Calculate urine-only renal and tubular markers (research-ready) |
| validate_inputs |
Validate required inputs for a calling function |
| vitamin_d_status |
Vitamin D Status Category |
| vitamin_markers |
Compute composite vitamin and endocrine marker ratios and z-scores |
| who5_score |
WHO-5 scoring |
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