# Scale Mixture of Skew-Normal Linear Mixed Models

## Documentation for package ‘skewlmm’ version 1.1.3

- DESCRIPTION file.
- Package NEWS.

## Help Pages

acfresid | Autocorrelation function for smn.lmm or smsn.lmm residuals
boot_ci | Extract confidence intervals from 'lmmBoot' object
boot_par | Parametric bootstrap for SMSN/SMN objects
coef | Extract coefficients from smsn.lmm, smn.lmm and smn.clmm objects
coef.SMN | Extract coefficients from smsn.lmm, smn.lmm and smn.clmm objects
coef.SMNclmm | Extract coefficients from smsn.lmm, smn.lmm and smn.clmm objects
coef.SMSN | Extract coefficients from smsn.lmm, smn.lmm and smn.clmm objects
confint | Computes confidence intervals from smn.lmm and smsn.lmm fitted models
confint.SMN | Computes confidence intervals from smn.lmm and smsn.lmm fitted models
confint.SMSN | Computes confidence intervals from smn.lmm and smsn.lmm fitted models
criteria | Extracts criteria for model comparison of SMSN/SMN/SMNclmm objects
errorVar | Error scale matrix associated with 'times'
fitted.SMN | Extract smn.lmm fitted values
fitted.SMNclmm | Extract smn.clmm fitted values
fitted.SMSN | Extract smsn.lmm fitted values
fixef | Extract estimated fixed effects from smsn.lmm, smn.lmm and smn.clmm objects
fixef.SMN | Extract estimated fixed effects from smsn.lmm, smn.lmm and smn.clmm objects
fixef.SMSN | Extract estimated fixed effects from smsn.lmm, smn.lmm and smn.clmm objects
formula | Formula from an smn.lmm and smsn.lmm models
formula.SMN | Formula from an smn.lmm and smsn.lmm models
formula.SMSN | Formula from an smn.lmm and smsn.lmm models
healy.plot | Healy-type plot from a smn.lmm or smsn.lmm object
lmmControl | Control options for 'smsn.lmm()', 'smn.lmm()' and 'smn.clmm()'
logLik.SMN | Log-likelihood of an smn.lmm and smsn.lmm models
logLik.SMSN | Log-likelihood of an smn.lmm and smsn.lmm models
lr.test | Likelihood-ratio test for SMSN/SMN objects
mahalDist | Mahalanobis distance from a smn.lmm or smsn.lmm object
mahalDistCens | Mahalanobis distance from a smn.clmm object
miceweight | Data set for clinical trial measuring mice weight
nobs | Extract the number of observations from smn.lmm and smsn.lmm fitted models
nobs.SMN | Extract the number of observations from smn.lmm and smsn.lmm fitted models
nobs.SMSN | Extract the number of observations from smn.lmm and smsn.lmm fitted models
plot.acfresid | Plot ACF for smn.lmm or smsn.lmm residuals
plot.mahalDist | Plot Mahalanobis distance for a fitted smn.lmm or smsn.lmm
plot.mahalDistCens | Plot Mahalanobis distance for a fitted smn.clmm
plot.SMN | Plot a smn.lmm or smsn.lmm object
plot.SMNclmm | Plot a smn.clmm object
plot.SMSN | Plot a smn.lmm or smsn.lmm object
predict.SMN | Prediction of future observations from an smn.lmm object
predict.SMNclmm | Prediction of future observations from an smn.clmm object
predict.SMSN | Prediction of future observations from an smsn.lmm object
print.SMN | Print a smn.lmm object
print.SMNclmm | Print a smn.clmm object
print.SMSN | Print a smsn.lmm object
ranef | Extract random effects from smsn.lmm, smn.lmm and smn.clmm objects
ranef.SMN | Extract random effects from smsn.lmm, smn.lmm and smn.clmm objects
ranef.SMNclmm | Extract random effects from smsn.lmm, smn.lmm and smn.clmm objects
ranef.SMSN | Extract random effects from smsn.lmm, smn.lmm and smn.clmm objects
residuals.SMN | Extract model residuals from smn.lmm and smsn.lmm objects
residuals.SMNclmm | Extract model residuals from smn.clmm objects
residuals.SMSN | Extract model residuals from smn.lmm and smsn.lmm objects
rsmsn.clmm | Generate data from SMSN-CLMM with censored responses
rsmsn.lmm | Generate data from SMSN-LMM
sigma | Residual standard deviation from smn.lmm and smsn.lmm objects
sigma.SMN | Residual standard deviation from smn.lmm and smsn.lmm objects
sigma.SMSN | Residual standard deviation from smn.lmm and smsn.lmm objects
smn.clmm | ML estimation of scale mixture of normal linear mixed models with censored responses
smn.lmm | ML estimation of scale mixture of normal linear mixed models
smsn.lmm | ML estimation of scale mixture of skew-normal linear mixed models
summary.SMN | Summary of a smn.lmm object
summary.SMNclmm | Summary of a smn.clmm object
summary.SMSN | Summary of a smsn.lmm object
update.SMN | Update for SMSN/SMN/SMNclmm objects
update.SMNclmm | Update for SMSN/SMN/SMNclmm objects
update.SMSN | Update for SMSN/SMN/SMNclmm objects
UTIdata | Data set for Unstructured Treatment Interruption Study
weight_plot | Weight plot for smn.lmm or smsn.lmm object