Package: CommKern
Version: 1.0.1
Title: Network-Based Communities and Kernel Machine Methods
Authors@R: c(person(given = "Alexandria", family = "Jensen",  email = "alexandria.jensen@cuanschutz.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-6337-9079")),
             person(given = "Peter",      family = "DeWitt",  email = "peter.dewitt@cuanschutz.edu",      role = c("ctb"),        comment = c(ORCID = "0000-0002-6391-0795")),
             person(given = "Debashis",   family = "Ghosh",   email = "debashis.ghosh@cuanschutz.edu",    role = c("ths"),        comment = c(ORCID = "0000-0001-6618-1316"))
             )
Description: Analysis of network community objects with applications to neuroimaging data. There are two main components to this package. The first is the hierarchical multimodal spinglass (HMS) algorithm, which is a novel community detection algorithm specifically tailored to the unique issues within brain connectivity. The other is a suite of semiparametric kernel machine methods that allow for statistical inference to be performed to test for potential associations between these community structures and an outcome of interest (binary or continuous).
Depends: R (>= 4.0.0)
License: GPL (>= 2)
Encoding: UTF-8
URL: https://github.com/aljensen89/CommKern
Language: en-us
LazyData: true
Imports: ggnewscale, ggplot2, gridExtra, Matrix, RColorBrewer, reshape2
Suggests: knitr, matrixcalc, pheatmap, rmarkdown
RoxygenNote: 7.2.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-09-22 18:30:47 UTC; jenseale
Author: Alexandria Jensen [aut, cre] (<https://orcid.org/0000-0001-6337-9079>),
  Peter DeWitt [ctb] (<https://orcid.org/0000-0002-6391-0795>),
  Debashis Ghosh [ths] (<https://orcid.org/0000-0001-6618-1316>)
Maintainer: Alexandria Jensen <alexandria.jensen@cuanschutz.edu>
Repository: CRAN
Date/Publication: 2022-09-23 10:20:06 UTC
Built: R 4.6.0; ; 2026-04-06 02:59:32 UTC; windows
