Package: DiPALM
Type: Package
Title: Differential Pattern Analysis via Linear Modeling
Version: 1.2
Date: 2022-06-24
Author: Ryan C. Sartor <sartorry@gmail.com>, Kathleen Greenham <greenham@umn.edu>
Maintainer: Ryan C. Sartor <sartorry@gmail.com>
Description: Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.
License: GPL (>= 2)
Imports: limma, WGCNA, ggplot2
Suggests: edgeR
NeedsCompilation: no
Packaged: 2022-06-26 02:56:58 UTC; ryan
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2022-06-27 23:40:02 UTC
Built: R 4.6.0; ; 2026-04-08 03:54:23 UTC; windows
