* using log directory 'd:/Rcompile/CRANpkg/local/4.7/vDiveR.Rcheck'
* using R Under development (unstable) (2026-07-14 r90255 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-07-15 19:25:22 UTC
* checking for file 'vDiveR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'vDiveR' version '2.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'vDiveR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s] ERROR
Running examples in 'vDiveR-Ex.R' failed
The error most likely occurred in:

> ### Name: plot_conservation_level
> ### Title: Conservation Levels Distribution Plot
> ### Aliases: plot_conservation_level
> 
> ### ** Examples
> 
> plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15)
Error in `geom_richtext()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error:
! gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_gtable(data)
  4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$draw_geom(d, layout)
 14. │         └─ggplot2 (local) draw_geom(..., self = self)
 15. │           └─self$geom$draw_layer(...)
 16. │             └─ggplot2 (local) draw_layer(..., self = self)
 17. │               └─base::lapply(...)
 18. │                 └─ggplot2 (local) FUN(X[[i]], ...)
 19. │                   ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 20. │                   └─self$draw_panel(...)
 21. │                     └─ggtext (local) draw_panel(...)
 22. │                       └─gridtext::richtext_grob(...)
 23. │                         └─base::mapply(...)
 24. │                           └─gridtext (local) `<fn>`(...)
 25. │                             └─gridtext:::process_tags(xml2::as_list(doctree)$html$body, drawing_context)
 26. │                               └─gridtext:::dispatch_tag(node[[i]], tags[i], drawing_context)
 27. │                                 └─base::stop(...)
 28. └─base::.handleSimpleError(...)
 29.   └─rlang (local) h(simpleError(msg, call))
 30.     └─handlers[[1L]](cnd)
 31.       └─cli::cli_abort(...)
 32.         └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [4s] OK
  Running 'testthat.R' [4s]
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 ERROR