# An Interface Between the 'FSKX' Standard and 'R'

## Documentation for package ‘FSK2R’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

check_manifest_files | Checks that the files defined in the manifest exist
clean_empty_values | Recursively clean object by removing empty values
clean_json_string | Clean empty values from JSON string
convert_metadata_to_lists | Fix the metadat so that it is lists
create_fsk | Creates an FSK model from an existing R script
dataframe_to_list | Converts a dataframe to a list
export_fsk | Exports an object of FSK class as an .fskx file
export_manifest | Functions for exporting the manifest of an FSK2R object
export_metadata | Function for exporting the metadata of an FSK2R object
export_modelmetadata | Functions for exporting the model metadata of an FSK2R object
export_otherfiles | Export other files
export_packages | Functions for exporting the packages of an FSK2R object
export_readme | Functions for exporting the README of an FSK2R object
export_R_model | Functions for exporting the R model of an FSK2R object
export_sbmlModel | Export the model.sbml
export_simulation | Export the sim.sedml
export_visualization | Functions for exporting the visualization script of an FSK2R object
export_workspace | Functions for exporting the workspace of an FSK2R object
extract_script_filenames_from_rdf | Extract script filenames from RDF metadata
find_packages | Finds where packages are stored
FSKAuthor | Author Information
FSKCreator | Author Information
FSKDataBackground | Data Background Section
FSKGeneralInformation | General Information Section
FSKMetadata | FSK Metadata Classes
FSKModelCategory | Model Category Information
FSKModelMath | Model Math Section
FSKParameter | Parameter Information
FSKReference | Reference Information
FSKScope | Scope Section
FSK_runner | Startup FSK runner
get_background | Returns the background of an FSK object
get_general_info | Returns the general info of an FSK object
get_modelmath | Returns the model math of an FSK object
get_readme | Readme of an FSK object
get_scope | Returns the scope of an FSK object
get_session_info | Extract session information
get_simulations | Returns a summary of the simulations of an FSK object
import_fsk | Import an FSK model into R
import_fsk_join | Import of FSK with join node
is.FSK2R | Is it an instance of FSK2R?
is_fsk_with_r | Does the object have an R model?
map_FSK_metadata | Map for the contents of the metadata
map_metadata_xml_template | Map between the names used in the template and the xml
metadata_list_to_fsk | From read_fsk_metadata_XX to FSK2R format
n_simuls_fsk | Number of simulations in the FSK2R object
read_fsk_json_metadata | Read the metadata.json file
read_fsk_manifest | Read the manifest of an FSK file and convert it to a data.frame
read_fsk_metadata_excel | FSK metadata from local Excel file
read_fsk_model | Read the model.sbml
read_fsk_packages | Read the packages.json
read_fsk_rdf_metadata | Read the metadata.rdf
read_fsk_readme | Read the README file
read_fsk_sim | Read the sim.sedml file
read_other_files | Read "other files"
read_R_model | Reads the R model in an FSK model
read_visualization | Reads the visualization script in an FSK model
run_all_simulations | Run every simulation in an FSK object
run_simulation | Run one simulation in an FSK object
set_new_simulation | Define a new simulation in an FSK2R object
set_readme | Readme of an FSK object
update_manifest | Updates the manifest file