Gene Set Analysis Toolkit WebGestaltR
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Documentation for package ‘WebGestaltR’ version 1.0.0
Help Pages
| WebGestaltR-package | WebGestaltR: The R interface for enrichment analysis with WebGestalt. |
| affinityPropagation | Affinity Propagation |
| formatCheck | Check Format and Read Data |
| GOSlimSummary | GO Slim Summary |
| goSlimSummary | GO Slim Summary |
| IDMapping | ID Mapping |
| idMapping | ID Mapping |
| idToSymbol | ID Mapping |
| jaccardSim | Jaccard Similarity |
| kMedoid | kMedoid |
| listArchiveURL | List WebGestalt Servers |
| listArchiveUrl | List WebGestalt Servers |
| listGeneSet | List Gene Sets |
| listIDType | List ID Types |
| listIdType | List ID Types |
| listOrganism | List Organisms |
| listReferenceSet | List Reference Sets |
| loadGeneSet | Load gene set data |
| multiswGsea | Site Weighted Gene Set Enrichment Analysis |
| prepareGseaInput | Prepare input for standard GSEA |
| prepareInputMatrixGsea | Prepare Input Matrix for GSEA |
| readGmt | Read GMT File |
| swGsea | Site Weighted Gene Set Enrichment Analysis |
| WebGestaltR | WebGestaltR: The R interface for enrichment analysis with WebGestalt. |
| WebGestaltRBatch | WebGestaltR: The R interface for enrichment analysis with WebGestalt. |
| WebGestaltRMultiOmics | WebGestaltRMultiOmics |
| WebGestaltRMultiOmicsGSEA | Multi-omics GSEA importFrom dplyr bind_rows left_join arrange select desc importFrom readr write_tsv |
| WebGestaltRMultiOmicsOra | Multi-omics ORA importFrom dplyr bind_rows left_join arrange select desc importFrom readr write_tsv |
| WebGestaltR_batch | WebGestaltR: The R interface for enrichment analysis with WebGestalt. |
| weightedSetCover | Weighted Set Cover |