action_to_onehot        Convert Action Column to One-Hot Encoding
actor_endpoints         Tidy per-actor endpoint summary of a
                        wide-format sequence dataset
as_htna                 Build a grouped node-level network (htna) from
                        data and a clustering
as_netdifference        Coerce an inferential comparison to a network
                        difference
as_netobject            Coerce a network object to a Nestimate
                        netobject
as_networks             Promote a psychometric MCML result to a network
                        group
as_tna                  Convert cluster_summary to tna Objects
association_rules       Discover Association Rules from Sequential or
                        Transaction Data
bayes_compare           Bayesian Dirichlet-Multinomial comparison of
                        two transition networks
betti_numbers           Betti Numbers
bipartite_groups        Hypergraph from bipartite group / event data
boot_glasso             Bootstrap for Regularized Partial Correlation
                        Networks
bootstrap_network       Bootstrap a Network Estimate
bottleneck_distance     Bottleneck Distance Between Persistence
                        Diagrams
build_atna              Build an Attention-Weighted Transition Network
                        (ATNA)
build_clusters          Cluster Sequences by Dissimilarity
build_cna               Build a Co-occurrence Network (CNA)
build_cor               Build a Correlation Network
build_ftna              Build a Frequency Transition Network (FTNA)
build_gimme             GIMME: Group Iterative Multiple Model
                        Estimation
build_glasso            Build a Graphical Lasso Network (EBICglasso)
build_hon               Build a Higher-Order Network (HON)
build_honem             Build HONEM Embeddings for Higher-Order
                        Networks
build_hypa              Detect Path Anomalies via HYPA
build_hypergraph        Higher-order hypergraph from a network's clique
                        structure
build_ising             Build an Ising Network
build_mcml              Build MCML from Raw Transition Data
build_mcml_pc           Multi-Cluster Multi-Level Aggregation for
                        Psychometric Networks
build_mlvar             Build a Multilevel Vector Autoregression
                        (mlVAR) network
build_mmm               Fit a Mixed Markov Model
build_mogen             Build Multi-Order Generative Model (MOGen)
build_network           Build a Network
build_pcor              Build a Partial Correlation Network
build_simplicial        Build a Simplicial Complex
build_tna               Build a Transition Network (TNA)
casedrop_reliability    Edge-weight Case-dropping Stability
centrality_stability    Centrality Stability Coefficient
                        (CS-coefficient)
certainty               Analytic certainty of network edges (Bayesian
                        Dirichlet-Multinomial)
chain_structure         Qualitative structure of a discrete-time Markov
                        chain
chatgpt_srl             ChatGPT Self-Regulated Learning Scale Scores
clique_expansion        Clique expansion of a hypergraph
cluster_choice          Cluster Choice - sweep k, dissimilarity and
                        method
cluster_diagnostics     Cluster Diagnostics
cluster_mmm             Cluster sequences using Mixed Markov Models
cluster_network         Cluster data and build per-cluster networks in
                        one step
cluster_summary         Cluster Summary Statistics
coefs                   Tidy coefficients from a fitted mlvar model
compare_mmm             Compare MMM fits across different k
compare_model           Compare two networks descriptively
compare_model.netobject_group
                        Compare two networks within a netobject_group
convert_sequence_format
                        Convert Sequence Data to Different Formats
cooccurrence            Build a Co-occurrence Network
distribution_plot       State Distribution Plot Over Time
estimate_network        Estimate a Network (Deprecated)
euler_characteristic    Euler Characteristic
evaluate_links          Evaluate Link Predictions Against Known Edges
extract_edges           Extract Edge List with Weights
extract_initial_probs   Extract Initial Probabilities from Model
extract_transition_matrix
                        Extract Transition Matrix from Model
frequencies             Sequence Data Conversion Functions
get_estimator           Retrieve a Registered Estimator
group_regulation_long   Group Regulation in Collaborative Learning
                        (Long Format)
hypergraph_centrality   Hypergraph eigenvector centralities
hypergraph_measures     Structural measures for a hypergraph
learning_activities     Online Learning Activity Indicators
list_estimators         List All Registered Estimators
loading_stability       Composite-Weight Stability Under Case
                        Resampling
long-data               Human-AI Vibe Coding Interaction Data (Long
                        Format)
long_to_wide            Convert Long Format to Wide Sequences
magnitude_difference    Magnitude difference between the frequency and
                        probability views
mark_first_state        Mark leading-NA cells with an explicit state
                        label
mark_terminal_state     Mark terminal-NA cells with an explicit state
                        label
markov_order_test       Test the Markov order of a sequential process
markov_stability        Markov Stability Analysis
mogen_transitions       Extract Transition Table from a MOGen Model
mosaic_analysis         Two-variable mosaic analysis (chi-square test +
                        flat mosaic)
mosaic_plot             Mosaic Plot of a Network's Transition or
                        Co-occurrence Counts
nct                     Network Comparison Test
net_aggregate_weights   Aggregate Edge Weights
net_centrality          Compute Centrality Measures for a Network
net_deprune             Undo Network Pruning
net_edge_betweenness    Edge Betweenness Network
net_prune               Prune a Network's Edges
net_pruning_details     Report Network Pruning Details
net_reprune             Re-apply Network Pruning
network_reliability     Split-Half Reliability for Network Estimates
passage_time            Mean First Passage Times
path_counts             Count Path Frequencies in Trajectory Data
path_dependence         Per-Context Path Dependence at Order k
pathways                Extract Pathways from Higher-Order Network
                        Objects
permutation             Permutation Test for Network Comparison
persistence_landscape   Persistence Landscape
persistent_homology     Persistent Homology
plot.boot_glasso        Plot Method for boot_glasso
plot.chain_structure    Plot method for 'chain_structure'
plot.cluster_choice     Plot Method for cluster_choice
plot.mcml_pc            Plot an MCML-PC Object
plot.mmm_compare        Plot Method for mmm_compare
plot.mosaic_analysis    Plot method for mosaic_analysis objects
plot.net_association_rules
                        Plot Method for net_association_rules
plot.net_bayes          Plot method for net_bayes
plot.net_centrality     Plot centrality measures
plot.net_centrality_group
                        Plot grouped centrality measures
plot.net_cluster_diagnostics
                        Plot Method for net_cluster_diagnostics
plot.net_clustering     Plot Sequence Clustering Results
plot.net_comparison     Plot a network comparison
plot.net_edge_betweenness
                        Plot edge-betweenness scores
plot.net_gimme          Plot Method for net_gimme
plot.net_honem          Plot Method for net_honem
plot.net_markov_order   Plot Method for net_markov_order
plot.net_mmm            Plot Method for net_mmm
plot.net_mmm_clustering
                        Plot Method for MMM Clustering Attribute
plot.net_mogen          Plot Method for net_mogen
plot.net_path_dependence
                        Plot method for 'net_path_dependence'
plot.net_reliability    Plot Method for net_reliability
plot.net_sequence_comparison
                        Plot Method for net_sequence_comparison
plot.net_stability      Plot Method for net_stability
plot.net_transition_entropy
                        Plot method for 'net_transition_entropy'
plot.net_vertex_bootstrap
                        Plot Vertex Bootstrap Distributions
plot.net_vertex_comparison
                        Plot a Two-Network Vertex-Bootstrap Comparison
plot.pc_loading_stability
                        Plot Composite-Weight Stability
plot.persistence_landscape
                        Plot Persistence Landscape
plot.persistent_homology
                        Plot Persistent Homology
plot.q_analysis         Plot Q-Analysis
plot.simplicial_complex
                        Plot a Simplicial Complex
plot_mosaic             Draw a Marimekko / Mosaic Plot from a Tidy Data
                        Frame
plot_state_frequencies
                        Plot State Frequency Distributions
predict_links           Predict Missing or Future Links in a Network
predictability          Compute Node Predictability
prepare                 Prepare Event Log Data for Network Estimation
prepare_for_tna         Prepare Data for TNA Analysis
prepare_onehot          Import One-Hot Encoded Data into Sequence
                        Format
print.boot_glasso       Print Method for boot_glasso
print.chain_structure   Print method for 'chain_structure'
print.chain_structure_group
                        Print method for 'chain_structure_group'
print.cluster_choice    Print Method for cluster_choice
print.mcml              Print Method for mcml
print.mcml_layer        Print Method for an mcml Layer
print.mcml_pc           Print an MCML-PC Object
print.mmm_compare       Print Method for mmm_compare
print.mosaic_analysis   Print method for mosaic_analysis objects
print.nestimate_data    Print Method for nestimate_data
print.net_association_rules
                        Print Method for net_association_rules
print.net_bayes         Print method for net_bayes
print.net_bayes_group   Print method for net_bayes_group
print.net_bootstrap     Print Method for net_bootstrap
print.net_bootstrap_group
                        Print Method for net_bootstrap_group
print.net_certainty     Print Method for net_certainty
print.net_cluster_diagnostics
                        Print Method for net_cluster_diagnostics
print.net_clustering    Print Method for net_clustering
print.net_gimme         Print Method for net_gimme
print.net_hon           Print Method for net_hon
print.net_honem         Print Method for net_honem
print.net_hypa          Print Method for net_hypa
print.net_link_prediction
                        Print Method for net_link_prediction
print.net_markov_order
                        Print Method for net_markov_order
print.net_markov_order_group
                        Print method for 'net_markov_order_group'
print.net_markov_stability_group
                        Print method for 'net_markov_stability_group'
print.net_mlvar         Print method for net_mlvar
print.net_mmm           Print Method for net_mmm
print.net_mmm_clustering
                        Print Method for MMM Clustering Attribute
print.net_mogen         Print Method for net_mogen
print.net_mpt_group     Print method for 'net_mpt_group'
print.net_nct           Print Method for net_nct
print.net_path_dependence
                        Print method for 'net_path_dependence'
print.net_permutation   Print Method for net_permutation
print.net_permutation_group
                        Print Method for net_permutation_group
print.net_pruning_details
                        Print method for pruning details
print.net_reliability   Print Method for net_reliability
print.net_sequence_comparison
                        Print Method for net_sequence_comparison
print.net_stability     Print Method for net_stability
print.net_stability_group
                        Print Method for net_stability_group
print.net_transition_entropy
                        Print method for 'net_transition_entropy'
print.net_transition_entropy_group
                        Print method for 'net_transition_entropy_group'
print.net_vertex_bootstrap
                        Print a Vertex Bootstrap Result
print.net_vertex_comparison
                        Print a Two-Network Vertex-Bootstrap Comparison
print.netobject         Print Method for Network Object
print.netobject_group   Print Method for Group Network Object
print.netobject_ml      Print Method for Multilevel Network Object
print.pc_loading_stability
                        Print Composite-Weight Stability
print.persistence_landscape
                        Print Persistence Landscape
print.persistent_homology
                        Print persistent homology results
print.q_analysis        Print Q-analysis results
print.simplicial_complex
                        Print a simplicial complex
print.summary.net_path_dependence
                        Print method for 'summary.net_path_dependence'
print.summary.net_transition_entropy
                        Print method for
                        'summary.net_transition_entropy'
print.summary_chain_structure
                        Print method for 'summary.chain_structure'
print.tidy_covariates   Print method for tidy covariate output
print.wtna_boot_mixed   Print Method for wtna_boot_mixed
print.wtna_mixed        Print Method for wtna_mixed
print.wtna_perm_mixed   Print Method for wtna_perm_mixed
q_analysis              Q-Analysis
register_estimator      Register a Network Estimator
remove_estimator        Remove a Registered Estimator
rename_models           Rename the models of a 'netobject_group'
sequence_compare        Compare Subsequence Patterns Between Groups
sequence_plot           Sequence Plot (heatmap, index, or distribution)
simplicial_degree       Simplicial Degree
srl_strategies          Self-Regulated Learning Strategy Frequencies
state_distribution      Per-Class State Distribution as a Tidy Data
                        Frame
state_freq              Print, Plot, and Convert a state_freq Object
state_frequencies       Compute State Frequencies from Trajectory Data
subtract_networks       Subtract one network from another
summary.boot_glasso     Summary Method for boot_glasso
summary.chain_structure
                        Tidy per-state summary of a 'chain_structure'
summary.chain_structure_group
                        Cross-group comparison of
                        'chain_structure_group'
summary.cluster_choice
                        Summary Method for cluster_choice
summary.mcml            Summary Method for mcml
summary.mcml_pc         Summarize an MCML-PC Object
summary.mmm_compare     Summary Method for mmm_compare
summary.mosaic_analysis
                        Summary method for mosaic_analysis objects
summary.nest_initial_probs
                        Summary Method for Initial Probability Vectors
summary.nest_transition_counts
                        Summary Method for Transition Count Matrices
summary.nest_transition_matrix
                        Summary Method for Transition Matrices
summary.net_association_rules
                        Summary Method for net_association_rules
summary.net_bayes       Summary method for net_bayes
summary.net_bayes_group
                        Summary method for net_bayes_group
summary.net_bootstrap   Summary Method for net_bootstrap
summary.net_bootstrap_group
                        Summary Method for net_bootstrap_group
summary.net_clustering
                        Summary Method for net_clustering
summary.net_gimme       Summary Method for net_gimme
summary.net_hon         Summary Method for net_hon
summary.net_honem       Summary Method for net_honem
summary.net_hypa        Summary Method for net_hypa
summary.net_link_prediction
                        Summary Method for net_link_prediction
summary.net_markov_order
                        Summary Method for net_markov_order
summary.net_mlvar       Summary method for net_mlvar
summary.net_mmm         Summary Method for net_mmm
summary.net_mogen       Summary Method for net_mogen
summary.net_nct         Summary Method for net_nct
summary.net_path_dependence
                        Summary method for 'net_path_dependence'
summary.net_permutation
                        Summary Method for net_permutation
summary.net_permutation_group
                        Summary Method for net_permutation_group
summary.net_reliability
                        Summary Method for net_reliability
summary.net_sequence_comparison
                        Summary Method for net_sequence_comparison
summary.net_stability   Summary Method for net_stability
summary.net_stability_group
                        Summary Method for net_stability_group
summary.net_transition_entropy
                        Summary method for 'net_transition_entropy'
summary.net_vertex_bootstrap
                        Summarize a Vertex Bootstrap Result
summary.net_vertex_comparison
                        Summarize a Two-Network Vertex-Bootstrap
                        Comparison
summary.netobject       Network metrics for a netobject
summary.netobject_group
                        Network metrics for a netobject_group
summary.wtna_boot_mixed
                        Summary Method for wtna_boot_mixed
summary.wtna_perm_mixed
                        Summary Method for wtna_perm_mixed
trajectories            Student Engagement Trajectories
transition_entropy      Transition Entropy of a Markov Chain
validate_netobject      Validate a netobject / cograph_network against
                        the shared schema
verify_simplicial       Verify Simplicial Complex Against igraph
vertex_bootstrap        Vertex Bootstrap for Network-Level Statistics
vertex_compare          Compare Network-Level Statistics of Two
                        Networks
wide_to_long            Convert Wide Sequences to Long Format
wtna                    Window-based Transition Network Analysis
