a37f038ab4fa583ef67b69e74cb3fbac *DESCRIPTION
28f7130127f2c21bcaf414e834a34090 *LICENSE
e48782724254cae6dca27108b41ee1da *NAMESPACE
1cb1b34e812dbdba07a59d1905d0eb1b *R/ASM.R
a9a7d4389406f72af2e0e163d03dd886 *R/extract_bam_regions.R
336ca71ca9e7568205fc37adea622491 *R/prepare_cpg_snp_input.R
670c128b933f0acd4b571ac684619a7c *R/run_pipeline.R
d5204d9a6cbd33aede097a025719d561 *README.md
30454561ad70c79bb60eda43626de324 *build/vignette.rds
b611b5b39d3def49376b31fc358c93a7 *inst/doc/ImprintCapASM-workflow.R
924733bada74eb5ebf1b8939ea73a3e4 *inst/doc/ImprintCapASM-workflow.Rmd
2914835e5eeb5ba0e38c59f3d1976b14 *inst/doc/ImprintCapASM-workflow.html
505c54bf26164aec939d07fb668fa758 *inst/extdata/example_cgmeth.txt
6b65c503879175e7b0a176f697c9bffb *inst/extdata/example_cpg_snp.bed
4b34598f3aec436bf26372f8bcb970f5 *inst/extdata/example_cpg_snp.xlsx
7d019025c797c9cd97038d29189ae4ee *inst/extdata/example_filter_cpgs.xlsx
4547966bb39a6b45c5d8a1c195e2fe9a *inst/extdata/example_markdup.bam
e7a8b3e0fb9f0786ba270cd3a2987556 *inst/extdata/example_markdup.bam.bai
21777b916010a137d90df166d69aea46 *inst/extdata/example_snp.out
f049b8bf12ef090577eca5fcc3d7bb65 *inst/extdata/filter_cpgs_ctrl.xlsx
8e5cf14cc7742a4b226f1b328354c80a *inst/extdata/filter_cpgs_pat.xlsx
55ba4b7d26f860918e9bad2a39c46231 *man/ASM.Rd
fdab914371e50557cd360d4c689f8b3a *man/extract_bam_regions.Rd
0bcd321f1f75b225cd181cee7eed2014 *man/prepare_cpg_snp_input.Rd
641410e3b7edf1ed7fc03d8890f8e933 *man/run_pipeline.Rd
43efde218e4a99425d362a51b24d7b20 *tests/testthat.R
7431870aca3a3ba18cb7d2a153306e6f *tests/testthat/test-ASM.R
10be11dbc58511bbced3d7a0800c16c1 *tests/testthat/test-extract_bam_regions.R
6604675d58f99cff61b9dc7c1e90ea0c *tests/testthat/test-prepare_cpg_snp_input.R
924733bada74eb5ebf1b8939ea73a3e4 *vignettes/ImprintCapASM-workflow.Rmd
