76933bf7a00b753fa85c0666cff25962 *DESCRIPTION
6d7b5465b8c9a2e7211f78c730947332 *NAMESPACE
321f21c9a249814c2649d3598c1b6ad5 *NEWS.md
dc1b36c433730710e122cf5239a5a885 *R/calc_population.R
39b5107dc8fb029706e47f3f6dcfeb45 *R/check-data.R
9d99ad4109a2cd6aca770b73f29400b9 *R/define-s4-class.R
27ef6b3add4e2c9e984eafd625eca8aa *R/if-statement.R
105a7acefe5aafb180d9f17f5fe87289 *R/jitter.R
bc1bc9c4efea46af4eb417ccc27cbece *R/like.R
0c1e1d15376a15d88c7e61bd3f5c55ae *R/make-parameters.R
b9e30eb5193cbc1ee3ca51bc3caa2e90 *R/misc.R
df25f373c377fa0a4f0fb1f8b0425d1f *R/model.R
18274f7aa257ef9635732e66ffbe7884 *R/model_int.R
1b54137d4ae82b40a266122de6d1201b *R/multiSA-package.R
3666cca544069f9acbceb0a9dab83fb8 *R/plot.R
54467d2e3f43e48050d20992b306bbb1 *R/prior.R
12451d67ddbc5db9e479c8f15ae478d9 *R/profile.R
2f73e8985451dc7513690b9d72d59d84 *R/report-int-data.R
ad75d29a2e9d0c26420a58d6db0210eb *R/report-int-state.R
a3891f4578152b470602d9c1c1ee6502 *R/report-rmd.R
5b14c9cec66ab7cd5bcbdd65abc3b356 *R/resid.R
8aedcfda10a671d0ec3ceac82db929af *R/retrospective.R
4ab7a60cd75bfbae312d50b550d38d6d *R/rtmb-methods.R
12009d57650cac69a8057329acf87ee7 *R/selectivity.R
ba31c9395a8c3b08b56afdf7105f66fe *R/simulate.R
bc07bc518543c59daf3a6cddda4e2843 *R/zzz.R
ba10c3cb8c12f4dc1959e106c2cb4082 *README.md
9d5d57306c989a862d29353812d857e7 *build/partial.rdb
4f56055418485fce10ab15a357a4b191 *inst/include/MSAreport.Rmd
ecafffcfd5025cb02c1bc7e6fc78d842 *inst/include/retrospective.Rmd
682ccdec5a242ebceffeacfdaceb1f7a *man/AD.Rd
4e14f82316331e864f8e3f8d4662f869 *man/CondExpLt.Rd
9acd9e6fa35edc25f04dec1e01cd0e8b *man/DCKMR-class.Rd
1e983497fd2edb256a5c0eabcfc65661 *man/Dfishery-class.Rd
1af570c8ac41fa72344e6e5acf943226 *man/Dlabel-class.Rd
5f353b7ad988e558039e6f5e1ddd126e *man/Dmodel-class.Rd
6f64e76fea6e27ac512f94482799bd8c *man/Dstock-class.Rd
4bd70f1b3ef224607a7c0ed910352d87 *man/Dsurvey-class.Rd
45af2f9eacd05af17d04e0d5faab19b2 *man/Dtag-class.Rd
77e2a0dcfb33e0c3a0c5024ac6e355f7 *man/MSAassess-class.Rd
08f3cf518ee5ff1db494b9b6e9677b8a *man/MSAdata-class.Rd
2c01eab0907376b1de0a1841ca652d06 *man/calc_F.Rd
5ad69ffebdcc94fa9026305165c4370d *man/calc_LAK.Rd
f029b9630c905b16990a93f5a70aa113 *man/calc_POP.Rd
c854f0216b19d1b88c90d8064553ba2c *man/calc_eqdist.Rd
6fe3006be2e87d65a810dcffe85c8b2b *man/calc_growth.Rd
7b34d9cb4ad954da8e82f73b9fff6e9e *man/calc_index.Rd
29e1437db6042599e8107f4f65499b42 *man/calc_init_population.Rd
e42397aa4a8a88f2226048680bb16c90 *man/calc_nextN.Rd
8e728e5bb05804f925a1eec13f500252 *man/calc_phi_project.Rd
7f534419caf07ebdcd6a073c80e16298 *man/calc_phi_simple.Rd
95f9aaffdb296f14df5f891cc1f8e5c7 *man/calc_population.Rd
9e72589b6ebd085f6d0aa13a7e10fb74 *man/calc_recruitment.Rd
6a315b02943b2e51eae40d7ed413c2f6 *man/check_data.Rd
3ae83bf66aaa457e9b3126d5439097ec *man/conv_Sigma.Rd
a54086bbde2554b6dcf9838f53f82c02 *man/conv_mov.Rd
f4e226e16f290ee9347cddd5b2476fd9 *man/conv_selpar.Rd
3d1a9c21510a7333914c30aa09dce062 *man/do_jitter.Rd
57a5aa997abfb5e1539f7f382928b9f6 *man/figures/README-hex.png
2e140ed00c9661ac5262ee7f6f501a93 *man/figures/intro-index-1.png
b61a4ac5699f60aebb6f928f3607462d *man/figures/intro-prof-1.png
83c720bcabb7fd564759ca70dbad41c8 *man/figures/intro-ret-1.png
de5c09f3416abed64b43ee0399fc96f6 *man/fit_MSA.Rd
d4189d6c756a1b1d4409be4fca15ec0f *man/get_MSAdata.Rd
249e5294631ae83965060a1f55c65f0b *man/get_sdreport.Rd
ef5a113c550c566b5f3392b9194ef459 *man/like_CKMR.Rd
8d859266264fe7b611ea2872215cdb78 *man/like_comp.Rd
4b88933f6525f5a85bc1f2bc80cca5df *man/make_parameters.Rd
5ef14bb1e6929e28d78f1b9d7c6a35cb *man/multiSA-package.Rd
b2b46265b845deadbe76bf8291e20acb *man/optimize_RTMB.Rd
eaf66346e54f723de7017738c8566fbe *man/plot-MSA-data.Rd
931abbf8ab431a2954a6316befab5cdd *man/plot-MSA-state.Rd
f826b1797c05814d5e42e9ceecbd92cb *man/posfun.Rd
9c9243ea035caf14eaef3126e1cc56ea *man/prior.Rd
deb4cccfd900eb19ae2b152f888748cf *man/profile.Rd
58e5be4b7d2f096d42cd6df13b9fabe8 *man/report.Rd
edf2563678c812c0ab0390f6920e9f58 *man/residuals.Rd
870505959108b061e99ca728d51921fe *man/retrospective.Rd
ad3f0816c88b7565b5fa939dc9a4a0b1 *man/sapply2.Rd
c65419d7b473e7ce67e17589caeffa49 *man/simulate.Rd
0cb9728de8c2ee4b0c7dd6a478339fc4 *man/softmax.Rd
e8fb547e31624afb4169254bf4539b19 *man/summary.Rd
