# Generated by roxygen2: do not edit by hand

export(aggregate_samples)
export(airPLS_fast_dataset)
export(aov_all_vars)
export(aov_one_var)
export(apply_by_group)
export(apply_by_groups)
export(baseline_correction)
export(convert_chebi_to_kegg)
export(convert_from_chemospec)
export(convert_hmdb_to_kegg)
export(convert_keggpathway_2_reactiongraph)
export(convert_multiple_spcmnm_to_kegg)
export(count_missing_values)
export(count_missing_values_per_sample)
export(count_missing_values_per_variable)
export(create_dataset)
export(create_pathway_with_reactions)
export(dataset_from_peaks)
export(feature_selection)
export(filter_feature_selection)
export(flat_pattern_filter)
export(get_MetabolitePath)
export(get_OrganismsCodes)
export(get_cpd_names)
export(get_files_list_per_assay)
export(get_metabPaths_org)
export(get_metabolights_study)
export(get_metabolights_study_files_assay)
export(get_metabolights_study_metadata_assay)
export(get_metabolights_study_samples_files)
export(get_paths_with_cpds_org)
export(get_peak_values)
export(get_samples_names_dx)
export(get_x_label)
export(get_x_values_as_text)
export(ica_analysis_dataset)
export(ica_kmeans_plot2D)
export(ica_kmeans_plot3D)
export(ica_loadingsplot)
export(ica_pairs_kmeans_plot)
export(ica_pairs_plot)
export(ica_scoresplot2D)
export(ica_scoresplot3D)
export(impute_nas_knn)
export(impute_nas_mean)
export(impute_nas_median)
export(impute_nas_value)
export(merge_data_metadata)
export(metabolights_studies_list)
export(missingvalues_imputation)
export(multiClassSummary)
export(pathway_analysis)
export(pca_analysis_dataset)
export(pca_biplot)
export(pca_biplot3D)
export(pca_importance)
export(pca_kmeans_plot2D)
export(pca_kmeans_plot3D)
export(pca_pairs_kmeans_plot)
export(pca_pairs_plot)
export(pca_plot_3d)
export(pca_robust)
export(pca_scoresplot2D)
export(pca_scoresplot3D)
export(pca_scoresplot3D_rgl)
export(pca_screeplot)
export(peak_detection2d)
export(raman_align_peaks)
export(raman_crop_spectra)
export(raman_despike)
export(raman_find_peaks)
export(raman_normalize)
export(raman_normalize_peak_features)
export(raman_sgolay_derivative)
export(raman_transform_fourier)
export(raman_transform_wavelet)
export(read_csvs_folder)
export(read_data_csv)
export(read_data_dx)
export(read_dataset_csv)
export(read_dataset_dx)
export(read_metadata)
export(read_ms_spectra)
export(read_multiple_csvs)
export(read_spc_nosubhdr)
export(recursive_feature_elimination)
export(remove_data)
export(remove_data_variables)
export(remove_metadata_variables)
export(remove_samples)
export(remove_samples_by_na_metadata)
export(remove_samples_by_nas)
export(remove_variables_by_nas)
export(remove_x_values_by_interval)
export(subset_by_samples_and_xvalues)
export(subset_metadata)
export(subset_random_samples)
export(subset_samples)
export(subset_samples_by_metadata_values)
export(subset_x_values)
export(subset_x_values_by_interval)
export(summary_var_importance)
export(train_and_predict)
export(train_classifier)
export(train_models_performance)
export(tsne_analysis_dataset)
export(tsne_kmeans_plot2D)
export(tsne_kmeans_plot3D)
export(tsne_pairs_kmeans_plot)
export(tsne_pairs_plot)
export(tsne_scoresplot2D)
export(tsne_scoresplot3D)
export(umap_analysis_dataset)
export(umap_kmeans_plot2D)
export(umap_kmeans_plot3D)
export(umap_pairs_kmeans_plot)
export(umap_pairs_plot)
export(umap_scoresplot2D)
export(umap_scoresplot3D)
importFrom(grDevices,
  colorRampPalette,
  dev.flush,
  dev.hold,
  palette
)
importFrom(graphics,
  abline,
  arrows,
  axis,
  box,
  boxplot,
  legend,
  lines,
  matplot,
  par,
  text
)
importFrom(methods,new)
importFrom(stats,
  IQR,
  TukeyHSD,
  aggregate,
  aov,
  approx,
  as.dendrogram,
  as.formula,
  convolve,
  cor,
  dendrapply,
  density,
  dhyper,
  dist,
  hclust,
  heatmap,
  is.leaf,
  kmeans,
  kruskal.test,
  ks.test,
  lm,
  mad,
  median,
  na.exclude,
  p.adjust,
  prcomp,
  predict,
  quantile,
  reformulate,
  rnorm,
  sd,
  spline
)
importFrom(utils,
  capture.output,
  head,
  modifyList,
  read.csv,
  read.table,
  tail,
  write.csv
)
