ef6426fea383fc9f9339515490b1ccf2 *DESCRIPTION
bb7b4d7858b8d42221d8dcb1db27742e *NAMESPACE
e583575f40cc25fb053934ad1d3d5fd2 *NEWS.md
118fecdd442eaa6d5a0a98805384280d *R/AAmass.R
57946f7bc77af52d1672e5da9d6cfb5d *R/AucRoc.R
1197feacfc786fa43bbb00da4c4edac2 *R/VolcanoPlotW2.R
8eeba2abb24e278d6f5fa5c491739654 *R/cleanListCoNames.R
6245a99d9bc42c0a69e358aa7dd45205 *R/combineMultFilterNAimput.R
3a08502d88bbabbfb3618111d4f62584 *R/convAASeq2mass.R
f1aefcc86d380e9143cdc28cce6a1fdf *R/corColumnOrder.R
ad09ad3c0a95ed4e828aeb0487d9ed52 *R/countNoOfCommonPeptides.R
baceffcfe99d67929ab770fc353b1ddb *R/exportAsWombatP.R
a7caa5c46b3f39d0d17938cffa284912 *R/exportSdrfDraft.R
c6801fe7f69f8c52186233010262f104 *R/extrSpeciesAnnot.R
171c04df69c74fc207ea78a8ec34f6fa *R/extractTestingResults.R
22159c1488d0bea7d3065994d0850208 *R/foldChangeArrow2.R
689d62232faa754ca63d9cfdfd2c7d72 *R/fuseProteomicsProjects.R
cfa157a35314ac8e32a3a10be0791fb2 *R/getUPS1acc.R
b042822f0abceaef7e019830b834d5a1 *R/inspectSpeciesIndic.R
e30ce533ef2595a4ef695ea68fbc84a8 *R/isolNAneighb.R
c2d07e024fad135ef597773ebf55a1da *R/massDeFormula.R
35199041089100df1890a6f7962147b0 *R/matrixNAinspect.R
262f59275837070178ed6df5d25ea199 *R/matrixNAneighbourImpute.R
c187a533c0e5536129567e924ed54283 *R/plotROC.R
d12e23b6549fd83ed5c2c10cefe55a40 *R/razorNoFilter.R
7c08fe775138c606ee78c0622beb23d1 *R/readAlphaPeptFile.R
454f2da03d26a47b8c8219639b96d8e0 *R/readDiaNNFile.R
f38e04d318267ea17a967b9160ccf346 *R/readDiaNNPeptides.R
472129472741982596fb9cafad344c8e *R/readFasta2.R
d864f1577098bd134b37b7f78a938b86 *R/readFragpipeFile.R
082c1a439a2c79c13bf9196c4f887d7f *R/readIonbotPeptides.R
8e2026f351b2db873334ce20aaf486fa *R/readMassChroQFile.R
b78a01127b1b0c8f0ef7b681be4a736b *R/readMaxQuantFile.R
06b9d3ae57ef4627dc0c99a7ee19fbbe *R/readMaxQuantPeptides.R
14ab5045bd6a47dfc5ef7099e8c18320 *R/readOpenMSFile.R
a364f28b596a152b0127dc2dc5e7305d *R/readProlineFile.R
a26fae99520027fe7d1d50986505f6a7 *R/readProtDiscovFile.R
53c64ee73fc511ed1eea12e37cdcad90 *R/readProteomeDiscovererFile.R
fdf928457225af5315cb85596105489d *R/readProteomeDiscovererPeptides.R
5b494d2fecedb7d52a5aef78c9e95836 *R/readSampleMetaData.R
62130921b77374d84268c5212c8aa213 *R/readSdrf.R
65581084dd89bf6f60364c6515bac558 *R/readUCSCtable.R
31aa0b6cf2c363ff591e1d4b596c14dc *R/readUniProtExport.R
b33b206b28a0b7ceac1f4e27a79dc010 *R/readWombatNormFile.R
ddb8249ce69e8c990439d0c8f8df8acc *R/removeSampleInList.R
85a02a46ab63728c1571e82f8edef713 *R/replMissingProtNames.R
f9f172f2fdedd59a9c5e52d7ee43fadf *R/shortSoftwName.R
3fb5a140a4f47b6f9826afd122cefc1f *R/summarizeForROC.R
7d2b69b9922ac9fe79509c81b636ba31 *R/test2grp.R
f558a48d5dbf87fa88cc61f058614768 *R/testRobustToNAimputation.R
c742c4429a389d4798e1fd5996f0e37e *R/writeFasta2.R
3d0f062f293676d42628c32c7d7cf702 *build/vignette.rds
717b76076bae470ae4b8b63bdce12936 *inst/doc/wrProteoVignette1.R
94b0a0ff35868af6bb1c5379cb713a91 *inst/doc/wrProteoVignette1.Rmd
01c8f05ce2ea7299dad8a65a8618d75d *inst/doc/wrProteoVignette1.html
01acfdbc2a9156be599fd670c273ff18 *inst/doc/wrProteoVignetteUPS1.R
7856c73bb4389c36cdc213369ad8aa43 *inst/doc/wrProteoVignetteUPS1.Rmd
d83e49af48ac72826c4fd6b1ed922178 *inst/doc/wrProteoVignetteUPS1.html
5a36dae79d2427c12f424b7b63273b63 *inst/extdata/OpenMS_tiny.csv.gz
fa4ddbca3647427a25de3ca91325b01d *inst/extdata/UCSC_hg38_chr11extr.gtf.gz
ff1a130752c828e6b2862351097e9a50 *inst/extdata/conta1.fasta.gz
ecce9c03a56859d9d2e35f6a8c7ac3c7 *inst/extdata/deUniProt_hg38chr11extr.tab
fd088c93fc9d4ce11d75cdccb3e51fcf *inst/extdata/exampleProlineABC.csv.gz
ef3a127cb7bd36499883856839d3b989 *inst/extdata/exampleProtDiscov1.txt.gz
3339337d25ff8813704da6921997476e *inst/extdata/parameters.txt.gz
c3cbb00e063cbb974e7f197a076c512d *inst/extdata/peptides_tinyMQ.txt.gz
903b0a68307c4e9541c89ecd39941cfe *inst/extdata/proteinGroups.txt.gz
359b295c744d24f3af38275d661c6e59 *inst/extdata/proteinGroupsMaxQuant1.txt.gz
393f403f2829db9fe4ff28794a423633 *inst/extdata/pxd001819_PD24_Proteins.txt.gz
a91db83677978169a0576c7a4ca3e749 *inst/extdata/pxd001819_PD_InputFiles.txt.gz
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93859d51bffe2efb895868be9dbf44f2 *inst/extdata/tinyAlpaPeptide.csv.gz
a858b4ba772436fc08a9e7fcd22cb051 *inst/extdata/tinyDiaNN1.tsv.gz
16d4e227fb74166e15d9ef132aaf9daa *inst/extdata/tinyFragpipe1.tsv.gz
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bf47bf530aa4861f0cc3aa05c7420091 *inst/extdata/tinyMC.RData
4ce3b64b9a16c21aebb640440016c6d3 *inst/extdata/tinyPD_allProteins.txt.gz
81843f6d0972828d6e4ee28b02357c8f *inst/extdata/tinyWombCompo1.csv.gz
d304e0b6672110cb2d1ea1de5752908d *man/AAmass.Rd
d7babe939a57c9c86fa155812381e969 *man/AucROC.Rd
3826b1ed016593cb43494cf778cf4055 *man/VolcanoPlotW2.Rd
308a97c8289e6316fd3d69d18a23dcce *man/cleanListCoNames.Rd
6d849e34f59ae960be0b7de59b571054 *man/combineMultFilterNAimput.Rd
4fefb1ef323348a877478cd1a506f373 *man/convAASeq2mass.Rd
963407e22ab566288566ca4e3e82a4e2 *man/corColumnOrder.Rd
6d22397ca5d82f3ea32d9908795525ab *man/countNoOfCommonPeptides.Rd
7aa8f38724d98c790cd7e13de57b936f *man/dot-atomicMasses.Rd
e84440c1cd38d837a13c2e80082d5cf2 *man/dot-checkKnitrProt.Rd
f78b68f598f10fddcb33e426dcec6c7a *man/dot-checkSetupGroups.Rd
dcf2fc0f595d624c97f483cd50bd6c71 *man/dot-commonSpecies.Rd
a3f64b99d428e7a853bf56d61fdafa5c *man/dot-extrSpecPref.Rd
e501b7a427116d4b7dbb839b998a52c9 *man/dot-getSpeciesFromEntryName.Rd
d0b8063f9e3e97168a49863d8c7d790d *man/dot-imputeNA.Rd
45937bd73cc0479b193b655c04b3245d *man/dot-parseFastaHeader.Rd
59cc7741a98868e14af92898e721fcba *man/dot-plotQuantDistr.Rd
b5c1c1c1d47076813345970857d6def9 *man/exportAsWombatP.Rd
71b9cd0941b88a8fb14ceec33fa522ef *man/exportSdrfDraft.Rd
d882966f436b7a20e61c8bd917aa75cb *man/extrSpeciesAnnot.Rd
4e376b25d57a711f766cded7fda11e3d *man/extractTestingResults.Rd
71cfe2f9d640164c6b18c522031a98db *man/foldChangeArrow2.Rd
1d50669966accf52bc352f5ce7f22e4b *man/fuseProteomicsProjects.Rd
705b70ce5c4a0bbbc07625714b21cc2b *man/getUPS1acc.Rd
f2352e157497586caaa5cb739605241d *man/inspectSpeciesIndic.Rd
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1894c173df88c9a6e8409ec5f49d135b *man/matrixNAinspect.Rd
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14f91e9cb7ae3c91ab185973119dd4d6 *man/razorNoFilter.Rd
fa3f5b3316e97168b4b00756a04ebd0e *man/readAlphaPeptFile.Rd
bc4a028c16d4de2090c214bb7e3a5539 *man/readDiaNNFile.Rd
df18b54e7c73799b9064b5e304c91585 *man/readDiaNNPeptides.Rd
cefc79136c01c3cabca2cf4e663406d5 *man/readFasta2.Rd
e56493761f3a41b0d720e9dee612cb80 *man/readFragpipeFile.Rd
ade56dbae45e2db0158cd1bce7c3d433 *man/readIonbotPeptides.Rd
a2ca0dd252a60551058a64a0b00eae10 *man/readMassChroQFile.Rd
2b7fe5c9dee425b004806088ad43ed20 *man/readMaxQuantFile.Rd
bde1dacd65ed38ad1bbb76eb0df55e45 *man/readMaxQuantPeptides.Rd
3249b679d013c0b9a68320a4fa482e34 *man/readOpenMSFile.Rd
1f88506799bcbc9dfeaa4ecb15ad42c1 *man/readProlineFile.Rd
03d7c1aab791f11a9712d9ee167d8ec5 *man/readProtDiscovFile.Rd
c9931bb6d03348c4bba0418dd9481a24 *man/readProtDiscovererPeptides.Rd
514ff7d253146fd447bfb9a2828ec32e *man/readProteomeDiscovererFile.Rd
3c4d965be4dce88b6cf918f49aae4c8b *man/readProteomeDiscovererPeptides.Rd
505c821a000e9b6d9e6780a362a019a9 *man/readSampleMetaData.Rd
a69c5af24410aeee5b55136fad135400 *man/readSdrf.Rd
f385ede47b4874e1f5c6b686b06b7c4d *man/readUCSCtable.Rd
ceb42e6d04a7b42a97c5cffc320ed611 *man/readUniProtExport.Rd
9eaad249f14530c7850979dd463f16db *man/readWombatNormFile.Rd
62b49b312928a5d60839707eec6a0801 *man/removeSampleInList.Rd
088025ff320c628a3df4efea5dea92ca *man/replMissingProtNames.Rd
e141b3e8d020604d8a1b11e15b845533 *man/shortSoftwName.Rd
59bf88c1bfc4cda8baedd8e2f11ef113 *man/summarizeForROC.Rd
0ba2955dfab88442ba3b604274133181 *man/test2grp.Rd
62cc3c3899a5bccfcec897c776435466 *man/testRobustToNAimputation.Rd
9989eb1c442fa9665185250f86224ce4 *man/writeFasta2.Rd
94b0a0ff35868af6bb1c5379cb713a91 *vignettes/wrProteoVignette1.Rmd
7856c73bb4389c36cdc213369ad8aa43 *vignettes/wrProteoVignetteUPS1.Rmd
