Last updated on 2026-09-03 20:57:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 7.42 | 522.12 | 529.54 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 4.13 | 385.02 | 389.15 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 56.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 351.72 | OK | |||
| r-devel-windows-x86_64 | 1.1.2 | 10.00 | 437.00 | 447.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 6.26 | 510.38 | 516.64 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 5.86 | 514.09 | 519.95 | OK | |
| r-release-macos-arm64 | 1.1.2 | 2.00 | 97.00 | 99.00 | OK | |
| r-release-macos-x86_64 | 1.1.2 | 5.00 | 370.00 | 375.00 | OK | |
| r-release-windows-x86_64 | 1.1.2 | 9.00 | 441.00 | 450.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | 2.00 | 113.00 | 115.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.2 | 5.00 | 407.00 | 412.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.2 | 11.00 | 623.00 | 634.00 | OK |
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Saving _problems/test-estimateSurvival-2615.R
Saving _problems/test-plotSurvival-176.R
Saving _problems/test-reexports-omopgenerics-43.R
[ FAIL 3 | WARN 0 | SKIP 69 | PASS 9 ]
══ Skipped tests (69) ══════════════════════════════════════════════════════════
• On CRAN (69): 'test-addCohortSurvival.R:2:3',
'test-addCohortSurvival.R:73:3', 'test-addCohortSurvival.R:159:3',
'test-addCohortSurvival.R:246:3', 'test-addCohortSurvival.R:345:3',
'test-addCohortSurvival.R:454:3', 'test-addCohortSurvival.R:558:3',
'test-addCohortSurvival.R:644:3', 'test-addCohortSurvival.R:736:3',
'test-addCohortSurvival.R:815:3', 'test-addCohortSurvival.R:917:3',
'test-asSurvivalResult.R:2:3', 'test-asSurvivalResult.R:41:3',
'test-asSurvivalResult.R:76:3', 'test-asSurvivalResult.R:116:3',
'test-asSurvivalResult.R:170:3', 'test-asSurvivalResult.R:225:3',
'test-asSurvivalResult.R:268:3', 'test-asSurvivalResult.R:311:3',
'test-asSurvivalResult.R:352:3', 'test-estimateSurvival.R:2:3',
'test-estimateSurvival.R:81:3', 'test-estimateSurvival.R:199:3',
'test-estimateSurvival.R:250:3', 'test-estimateSurvival.R:312:3',
'test-estimateSurvival.R:470:3', 'test-estimateSurvival.R:675:3',
'test-estimateSurvival.R:817:3', 'test-estimateSurvival.R:1314:3',
'test-estimateSurvival.R:1426:3', 'test-estimateSurvival.R:1448:3',
'test-estimateSurvival.R:1515:3', 'test-estimateSurvival.R:1700:3',
'test-estimateSurvival.R:1813:3', 'test-estimateSurvival.R:1843:3',
'test-estimateSurvival.R:1862:3', 'test-estimateSurvival.R:1895:3',
'test-estimateSurvival.R:2024:3', 'test-estimateSurvival.R:2244:3',
'test-estimateSurvival.R:2321:3', 'test-estimateSurvival.R:2377:5',
'test-estimateSurvival.R:2397:3', 'test-estimateSurvival.R:2442:3',
'test-estimateSurvival.R:2464:3', 'test-estimateSurvival.R:2488:3',
'test-estimateSurvival.R:2544:3', 'test-estimateSurvival.R:2596:3',
'test-estimateSurvival.R:2636:3', 'test-estimateSurvival.R:2668:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:22:3', 'test-plotSurvival.R:55:3',
'test-plotSurvival.R:86:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:137:3', 'test-plotSurvival.R:160:3',
'test-plotSurvival.R:189:3', 'test-plotSurvival.R:199:3',
'test-reexports-omopgenerics.R:3:3', 'test-riskTable.R:2:3',
'test-riskTable.R:65:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:94:3', 'test-tableSurvival.R:124:3',
'test-tableSurvival.R:148:3', 'test-tableSurvival.R:158:3',
'test-tableSurvivalAttrition.R:2:3',
'test-validateExtractSurvivalInputs.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:2615:3'): cohort id or cohort name as inputs ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `mockMGUS2cdm()`: The package "duckdb" is required.
Backtrace:
▆
1. └─CohortSurvival::mockMGUS2cdm() at test-estimateSurvival.R:2615:3
2. └─rlang::check_installed("duckdb")
── Error ('test-plotSurvival.R:176:3'): plot with bound results with different hidden inputs ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `mockMGUS2cdm()`: The package "duckdb" is required.
Backtrace:
▆
1. └─CohortSurvival::mockMGUS2cdm() at test-plotSurvival.R:176:3
2. └─rlang::check_installed("duckdb")
── Error ('test-reexports-omopgenerics.R:43:3'): omopgenerics filterSettings ───
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `mockMGUS2cdm()`: The package "duckdb" is required.
Backtrace:
▆
1. └─CohortSurvival::mockMGUS2cdm() at test-reexports-omopgenerics.R:43:3
2. └─rlang::check_installed("duckdb")
[ FAIL 3 | WARN 0 | SKIP 69 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a00_Creating_cohorts_for_survival.Rmd’ using rmarkdown
Quitting from a00_Creating_cohorts_for_survival.Rmd:30-32 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `CohortSurvival::mockMGUS2cdm()`:
! The package "duckdb" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a00_Creating_cohorts_for_survival.Rmd' failed with diagnostics:
The package "duckdb" is required.
--- failed re-building ‘a00_Creating_cohorts_for_survival.Rmd’
--- re-building ‘a01_Single_event_of_interest.Rmd’ using rmarkdown
Quitting from a01_Single_event_of_interest.Rmd:31-33 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `CohortSurvival::mockMGUS2cdm()`:
! The package "duckdb" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01_Single_event_of_interest.Rmd' failed with diagnostics:
The package "duckdb" is required.
--- failed re-building ‘a01_Single_event_of_interest.Rmd’
--- re-building ‘a02_Competing_risk_survival.Rmd’ using rmarkdown
Quitting from a02_Competing_risk_survival.Rmd:31-33 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `CohortSurvival::mockMGUS2cdm()`:
! The package "duckdb" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a02_Competing_risk_survival.Rmd' failed with diagnostics:
The package "duckdb" is required.
--- failed re-building ‘a02_Competing_risk_survival.Rmd’
--- re-building ‘a03_Further_survival_analyses.Rmd’ using rmarkdown
Quitting from a03_Further_survival_analyses.Rmd:31-33 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `CohortSurvival::mockMGUS2cdm()`:
! The package "duckdb" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a03_Further_survival_analyses.Rmd' failed with diagnostics:
The package "duckdb" is required.
--- failed re-building ‘a03_Further_survival_analyses.Rmd’
SUMMARY: processing the following files failed:
‘a00_Creating_cohorts_for_survival.Rmd’
‘a01_Single_event_of_interest.Rmd’ ‘a02_Competing_risk_survival.Rmd’
‘a03_Further_survival_analyses.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang