Last updated on 2026-09-04 08:51:01 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 8.06 | 173.00 | 181.06 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 6.71 | 128.31 | 135.02 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 127.64 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 125.94 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 14.00 | 230.00 | 244.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.2 | 6.62 | 164.74 | 171.36 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 8.77 | 167.63 | 176.40 | OK | |
| r-release-macos-arm64 | 1.0.2 | 2.00 | 47.00 | 49.00 | OK | |
| r-release-macos-x86_64 | 1.0.2 | 6.00 | 250.00 | 256.00 | OK | |
| r-release-windows-x86_64 | 1.0.2 | 36.00 | 221.00 | 257.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.2 | 14.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 16.00 | 276.00 | 292.00 | OK |
Version: 1.0.2
Check: tests
Result: ERROR
Running 'testthat.R' [25s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PopPsiSeqR)
>
> test_check("PopPsiSeqR")
Saving _problems/test-io-6.R
Saving _problems/test-io-8.R
Saving _problems/test-io-17.R
Saving _problems/test-io-22.R
Saving _problems/test-io-32.R
Saving _problems/test-io-33.R
Saving _problems/test-io-35.R
Warning: stack imbalance in '<-', 93 then 95
[ FAIL 7 | WARN 3 | SKIP 1 | PASS 5 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• {httr} is not installed. (1): 'test-frqshft.R:8:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-io.R:6:3'): merged allele frequencies can be loaded ──────────
Expected `frequencies.bg <- import.freqtbl(merged_frequencies.filename)` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'httr'
── Error ('test-io.R:8:3'): merged allele frequencies can be loaded ────────────
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'frequencies.bg' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-io.R:8:3
2. │ └─testthat::quasi_label(enquo(expected), expected.label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─utils::head(frequencies.bg, n = 1)
── Failure ('test-io.R:17:3'): shifted frequencies can be saved ────────────────
Expected `PopPsiSeqR::export.freqshft(shift2save, shift_frequencies.filename)` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'httr'
── Failure ('test-io.R:22:3'): shifted frequencies can be saved ────────────────
Expected `correct_hashes` to contain all values in `tools::md5sum(shift_frequencies.filename)[[1]]`.
Actual: "e37492c5b6b3396449ec70e2ae27862a", "8f3feb89facba1da64e34533b8a0b618"
Expected: NA
Missing: NA
── Failure ('test-io.R:32:3'): windowed shifts can be loaded ───────────────────
Expected `windowed_shifts.bg <- import.smvshift(windowed_shifts.filename)` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'httr'
── Failure ('test-io.R:33:3'): windowed shifts can be loaded ───────────────────
Expected `windowed_shifts.bg <- windowed_shifts.bg %>% as.data.frame()` not to throw any errors.
Actually got a <objectNotFoundError> with message:
object 'windowed_shifts.bg' not found
── Error ('test-io.R:35:3'): windowed shifts can be loaded ─────────────────────
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'windowed_shifts.bg' not found
[ FAIL 7 | WARN 3 | SKIP 1 | PASS 5 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggbio’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64