Last updated on 2026-09-03 20:57:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 22.70 | 323.78 | 346.48 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 16.23 | 215.59 | 231.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 19.00 | 194.94 | 213.94 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 17.00 | 211.83 | 228.83 | OK | |
| r-devel-windows-x86_64 | 0.7.0 | 26.00 | 295.00 | 321.00 | OK | |
| r-patched-linux-x86_64 | 0.7.0 | 19.97 | 304.42 | 324.39 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 19.91 | 301.99 | 321.90 | OK | |
| r-release-macos-arm64 | 0.7.0 | 8.00 | 109.00 | 117.00 | OK | |
| r-release-macos-x86_64 | 0.7.0 | 19.00 | 396.00 | 415.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 23.00 | 287.00 | 310.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | 7.00 | 115.00 | 122.00 | OK | |
| r-oldrel-macos-x86_64 | 0.7.0 | 18.00 | 365.00 | 383.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 32.00 | 411.00 | 443.00 | OK |
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [111s/162s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(omock)
>
> test_check("omock")
! Input tables only contain the observation_period table, hence only the person table will be updated
i Attempting download with timeout = 120 seconds.
i Reading GiBleed tables.
i Creating '/tmp/RtmpOYDpWI/working_dir/RtmpoMk2B3/DATASETS'.
i Attempting download with timeout = 120 seconds.
i Deleting prior version of GiBleed.
i Attempting download with timeout = 120 seconds.
i Attempting download with timeout = 120 seconds.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Adapting cdmVersion from 5.3 to 5.4.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Inserting <cdm_reference> into duckdb.
Saving _problems/test-mockDatasets-50.R
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Inserting <cdm_reference> into duckdb.
Saving _problems/test-mockDatasets-52.R
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Adapting cdmVersion from 5.3 to 5.4.
i Attempting download with timeout = 120 seconds.
i Reading GiBleed tables.
Joining with `by = join_by(visit_occurrence_id)`
i Reading GiBleed tables.
i Reading GiBleed tables.
[ FAIL 2 | WARN 0 | SKIP 2 | PASS 236 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-changeCdmVersion.R:2:3', 'test-mockDatasets.R:81:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mockDatasets.R:50:3'): mock datasets cdm creation ────────────
Expected `cdm <- mockCdmFromDataset(datasetName = dbName, source = "duckdb")` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "duckdb" is required.
── Failure ('test-mockDatasets.R:52:3'): mock datasets cdm creation ────────────
Expected `cdm <- mockCdmFromDataset(datasetName = dbName, source = "duckdb")` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "duckdb" is required.
[ FAIL 2 | WARN 0 | SKIP 2 | PASS 236 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘mock_from_tables.Rmd’ using rmarkdown
--- finished re-building ‘mock_from_tables.Rmd’
--- re-building ‘subset_concepts.Rmd’ using rmarkdown
--- finished re-building ‘subset_concepts.Rmd’
--- re-building ‘synthetic_clinical_tables.Rmd’ using rmarkdown
--- finished re-building ‘synthetic_clinical_tables.Rmd’
--- re-building ‘synthetic_cohorts.Rmd’ using rmarkdown
--- finished re-building ‘synthetic_cohorts.Rmd’
--- re-building ‘synthetic_datasets.Rmd’ using rmarkdown
Quitting from synthetic_datasets.Rmd:127-130 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `mockCdmFromDataset()`:
! The package "duckdb" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'synthetic_datasets.Rmd' failed with diagnostics:
The package "duckdb" is required.
--- failed re-building ‘synthetic_datasets.Rmd’
--- re-building ‘synthetic_vocabulary.Rmd’ using rmarkdown
--- finished re-building ‘synthetic_vocabulary.Rmd’
SUMMARY: processing the following file failed:
‘synthetic_datasets.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang