Last updated on 2026-07-23 20:51:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.7.8 | 9.53 | 185.63 | 195.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.7.8 | 6.43 | 125.51 | 131.94 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.7.8 | 15.00 | 277.88 | 292.88 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.7.8 | 127.16 | OK | |||
| r-devel-windows-x86_64 | 2.7.8 | 12.00 | 203.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 2.7.8 | 9.96 | 170.33 | 180.29 | OK | |
| r-release-linux-x86_64 | 2.7.8 | 10.18 | 171.54 | 181.72 | OK | |
| r-release-macos-arm64 | 2.7.8 | 3.00 | 41.00 | 44.00 | OK | |
| r-release-macos-x86_64 | 2.7.8 | 7.00 | 176.00 | 183.00 | OK | |
| r-release-windows-x86_64 | 2.7.8 | 13.00 | 200.00 | 213.00 | OK | |
| r-oldrel-macos-arm64 | 2.7.8 | OK | ||||
| r-oldrel-macos-x86_64 | 2.7.8 | 7.00 | 206.00 | 213.00 | OK | |
| r-oldrel-windows-x86_64 | 2.7.8 | 14.00 | 240.00 | 254.00 | OK |
Version: 2.7.8
Check: tests
Result: ERROR
Running ‘asthma.R’ [11s/12s]
Running ‘culling.R’ [4s/5s]
Running ‘insem.R’ [4s/6s]
Running ‘mastitis.R’ [10s/11s]
Running ‘select.parfm.R’ [22s/24s]
Running the tests in ‘tests/culling.R’ failed.
Complete output:
> library(parfm)
Loading required package: survival
Loading required package: optimx
> data(culling)
> head(culling)
Cowid Time Status Herd Timeassess LogSCC
1 1 331 0 1 13 4.09
2 2 312 0 1 6 4.83
3 3 96 1 1 11 3.93
4 4 314 0 1 13 3.76
5 5 181 1 1 7 6.29
6 6 331 0 1 11 3.33
> culling <- culling[culling$Time > 0,]
> culling$TimeMonths <- culling$Time * 12 / 365.25
>
> set.seed(1)
> culling <- culling[sample(1:nrow(culling), 150),]
> parfm(Surv(TimeMonths, Status)~LogSCC, cluster="Herd", data=culling,
+ dist="exponential", frailty="gamma")
Frailty distribution: gamma
Baseline hazard distribution: Exponential
Loglikelihood: -180.345
ESTIMATE SE p-val
theta 0.000 0.538
lambda 0.022 0.013
LogSCC 0.043 0.124 0.728
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Kendall's Tau: 0
Warning message:
In parfm(Surv(TimeMonths, Status) ~ LogSCC, cluster = "Herd", data = culling, :*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-gcc