GeometricMorphometricsMix
0.6.1.1
- Improved permutation loop in
pls(), which now reduces
the memory footprint of permutation testing
- Added optional parallelism to
pls() via the
future/future.apply framework. Permutation
tests can now exploit multiple workers when a
future::plan() with more than one worker is active.
- Made
Kmultparallel() and its S3 methods
(print.parallel_Kmult(),
plot.parallel_Kmult(),
summary.parallel_Kmult()) defunct. All implementation code
and examples have been removed; calling these functions now signals an
informative error. Users should migrate to
geomorph::physignal() for computing phylogenetic signal
(parallel implementation is nowadays trivial).
- Moved
ape from Depends to
Suggests since no remaining exported function uses
ape directly.
GeometricMorphometricsMix
0.6.1.0
- Deprecated
Kmultparallel() and its S3 methods
(print.parallel_Kmult(),
plot.parallel_Kmult(),
summary.parallel_Kmult()). These functions will be removed
in a future version. Users should migrate to
geomorph::physignal() for computing phylogenetic
signal.
GeometricMorphometricsMix
0.6.0.1
- Updated DESCRIPTION to contain more information and relevant
references
- Replaced
\dontrun{} with \donttest{} in
examples for functions where examples are executable but take >5
seconds or require Suggests packages
- Both changes above made following the kind input by CRAN
reviewers
- Modified some examples of print, summary, and plot methods
GeometricMorphometricsMix
0.6.0.0
- Cleaned up code (e.g., line length)
- Fixed internal use of
sapply()
- Removed previously defunct functions
rarefied_convex_hull() and
rarefied_disparty()
GeometricMorphometricsMix
0.5.1.0
- Modified
RVcomparison() to accept grouped data with
pairwise comparisons
- Improved input validation for RV coefficient functions
GeometricMorphometricsMix
0.5.0.1
- Fixed scaling issue in
pls_major_axis()
GeometricMorphometricsMix
0.5
- Enhanced
RVrarefied() to support multiple groups and
customizable confidence intervals
- Added plotting functions for resampling estimates
- Changed deprecated disparity functions to defunct
- Created unit tests for
RVrarefied()
GeometricMorphometricsMix
0.4.3.0
- Switched
Kmultparallel() to use
future_lapply() for improved parallelization
- Parallelized bootstrapping and rarefaction analyses
GeometricMorphometricsMix
0.4.2.0
- Created general resampling function returning indexes
- Added bootstrap capability at lower sample sizes to
disparity_resample()
GeometricMorphometricsMix
0.4.1.0
- Added range reporting option to
disparity_resample()
when CI=1
- Removed input validation from main disparity function
GeometricMorphometricsMix
0.4
- Added new datasets for examples and vignettes
GeometricMorphometricsMix
0.3
- Added support for multiple datasets and tree sets to
Kmultparallel()
- Migrated
Kmultparallel() to use future for
parallelism
- Added S3 plot method for
Kmultparallel() output with
density plots
- Removed parallelsugar from suggested packages
GeometricMorphometricsMix
0.2
- Updated package description and title to reflect heterogeneous
methods
- Introduced new disparity resampling function with S3 methods
- Deprecated old disparity resampling functions
- Created vignette for disparity analyses