ImprintCapASM: Allele-Specific Methylation Analysis for Imprinted DMR
Diagnostics
Provides functions for SNP-phased allele-specific methylation (ASM)
analysis across the 41 canonical human imprinted differentially methylated
regions (DMRs). Reads are assigned to REF or ALT alleles based on
bisulfite-aware SNP detection, enabling diagnosis of imprinting disorders
from whole-genome bisulfite sequencing data.
<https://github.com/19-saha/ImprintCapASM>.
| Version: |
0.1.1 |
| Imports: |
data.table, readxl, writexl, vcfR, ggplot2, Rsamtools, tools |
| Suggests: |
testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: |
2026-06-30 |
| DOI: |
10.32614/CRAN.package.ImprintCapASM (may not be active yet) |
| Author: |
Subham Saha [aut, cre, cph],
Francesco Cecere [aut],
Frederic Brioude [aut, fnd] |
| Maintainer: |
Subham Saha <saha_19 at outlook.com> |
| BugReports: |
https://github.com/19-saha/ImprintCapASM/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/19-saha/ImprintCapASM |
| NeedsCompilation: |
no |
| SystemRequirements: |
samtools (>= 1.10) |
| Materials: |
README |
| CRAN checks: |
ImprintCapASM results |
Documentation:
Downloads:
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