MRS 1.3.2
- Standardized reproducibility seeds across examples, demos, tests,
and archived simulation scripts to
12345.
- Consolidated the former standalone examples into three
non-redundant, reproducible visual demos. They cover one-dimensional
Bayesian FDR, observed-versus-shuffled two-dimensional scans, pooled
versus replicate-aware fitting across small, medium, and large replicate
counts, both ANDOVA integration methods, baseline effects, and
representative multiresolution trees.
- Restored current CRAN metadata and registered all native
routines.
- Replaced deprecated Armadillo index-returning
max()
calls and fixed an uninitialized-variable path in the C++ tree
traversal.
- Added input validation that prevents invalid dimensions, labels,
bounds, and tuning parameters from reaching the C++ core.
- Restored the version 1.2.6 ANDOVA midpoint-quadrature default;
deterministic and randomized compatibility suites now reproduce legacy
numerical and tree results.
- Preserved the legacy default sample-space bounds for ordinary data
while safely supporting constant and non-positive dimensions.
- Documented posterior sampling, effect-size baselines, numerical
integration, and Bayesian-FDR plotting introduced on the development
branch.
- Fixed posterior sample matrix shaping and direction probabilities,
multidimensional sampling, sampling without a representative tree,
Bayesian-FDR matrix indexing, and a Riemann-quadrature second-moment
error.
- Kept sampled ANDOVA probabilities inside their valid domain and
removed undefined behavior in dyadic bin conversion and region
reconstruction.
- Added numerical compatibility, posterior-sampling, invariant,
validation, plotting, and native-routine regression tests.
- Removed the unused
optimx dependency and replaced the
igraph-backed representative-tree renderer with a deterministic
base-graphics renderer.
- Added explicit return-value documentation for all exported plotting
and print methods, including the meaning of their graphical or printed
side effects.