SCORPION: Single Cell Oriented Reconstruction of PANDA Individually
Optimized Networks
Constructs cell-type-specific gene regulatory networks from single-cell RNA-sequencing data. The method implements the SCORPION algorithm, which first aggregates individual cells into super-cells and then applies PANDA (Passing Attributes between Networks for Data Assimilation) to infer transcription factor-target regulatory relationships. It also provides statistical methods for differential edge analysis.
| Version: |
1.3.3 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
cli, methods, irlba, igraph, RANN, Matrix, pbapply, dplyr, furrr, future |
| Suggests: |
RhpcBLASctl, testthat, mori, circlize, biomaRt, fgsea |
| Published: |
2026-09-02 |
| DOI: |
10.32614/CRAN.package.SCORPION |
| Author: |
Daniel Osorio 
[aut, cre],
Marieke L. Kuijjer
[aut] |
| Maintainer: |
Daniel Osorio <daniecos at uio.no> |
| BugReports: |
https://github.com/kuijjerlab/SCORPION/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/kuijjerlab/SCORPION |
| NeedsCompilation: |
no |
| CRAN checks: |
SCORPION results |
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