## ----echo = FALSE-------------------------------------------------------------
library(knitr)
knitr::opts_chunk$set(
    warning = FALSE,
    message = FALSE,
    fig.align = "center")

## ----eval = FALSE-------------------------------------------------------------
#  library(pkgndep)
#  x = pkgndep("DESeq2")

## ----echo = FALSE-------------------------------------------------------------
library(pkgndep)
x = readRDS(system.file("extdata", "DESeq2_dep.rds", package = "pkgndep"))

## ----fig.width = 36.96, fig.height = 8.34, out.width="1200px"-----------------
dependency_heatmap(x)

## -----------------------------------------------------------------------------
# or create the plot in an HTML page
# dependency_report(x)

## -----------------------------------------------------------------------------
m = co_heaviness(x)
m

## ----fig.width = 6.5, fig.height = 5------------------------------------------
library(ComplexHeatmap)
Heatmap(m, name = "co-heaviness")

## -----------------------------------------------------------------------------
co_heaviness(x, jaccard = TRUE)